Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2309 ATGCAAAAGGAAAAGGAAGCAATCACCGCCAATAAGGAGGGCACTAATAAGAAGGACATAGGAATAATGGAATGTTGCCATGGAAAAGAGGAAACCCTACCACCTGGGTTTCGATTTCATCCAACCGACGAAGAACTCATTACTTGCTATCTCATAAACAAGATCTCGGATTCAAACTTTTCAGGCAGGGCAATAACTGATGTTGATCTCAATAAATGTGAGCCATGGGAGCTTCCAGGGAAGGCGAAGATGGGAGAAAAAGAATGGTACTTCTTCAGCCTGAGAGATCGTAAGTACCCAACTGGGGTGCGAACGAACCGAGCCACAAACACGGGGTATTGGAAGACCACCGGAAAAGACAAAGAGATCCTTAATAGTGTTACATCGGAGCTAGTTGGGATGAAGAAAACTTTGGTTTTCTACAAAGGAAGAGCCCCAAGGGGAGAGAAGAGTAATTGGGTCATGCATGAATATCGCATTCATTCTAAATCCACCTTTCGAACAACCAAGCAGGATGAATGGGTGGTTTGCCGTGTGTTCCAGAAGAGTGCCGGTGCAAAGAAGTACCCTTCTTCCAACCATGCAAGTAGGGCAATGAACCCTTTCAACCTTGAAATAGGTCACCACAATATTGTGCCGCCGCCGCCAATGATGCAACTCGGAGACCCCGCCGCCGCTCATTTCCTCTATGGAAGGAACTATATGAATACTGCAGAGTTAGCAGAAGTAGCTAGGGTTTTGCGTGTTGGTACTGGATCAACCAGTACCAACCTACCCGGGATGCAGCCTCAGATAAATTATCCAGTGGCTGCATCATCCCCAGGAGTTGGATTCACAATTTCAGGGCTCAATTTAAATCTAGGAGGCGGAGGAGGCGGAACAGTAGTGGCCACAACACAACCAGTTTTGCGGCCCATGCAGCCGACTCCTCCGTCCCAAACATTGGGTATGGTTCCTCATCATCAAGTTCATCATGATGTGAGTTCCAACATGATTTCTGGTGCTGAGAATGTGGGTTACGTCAATGAAATAAGCAACACAAATGGTGGTCATGGAAATAGGTTTATGGGCATGGATCATTGCATGGATCTTGATAATTACTGGCCTTCCTACTAA 1116 0.4633 MQKEKEAITANKEGTNKKDIGIMECCHGKEETLPPGFRFHPTDEELITCYLINKISDSNFSGRAITDVDLNKCEPWELPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEILNSVTSELVGMKKTLVFYKGRAPRGEKSNWVMHEYRIHSKSTFRTTKQDEWVVCRVFQKSAGAKKYPSSNHASRAMNPFNLEIGHHNIVPPPPMMQLGDPAAAHFLYGRNYMNTAELAEVARVLRVGTGSTSTNLPGMQPQINYPVAASSPGVGFTISGLNLNLGGGGGGTVVATTQPVLRPMQPTPPSQTLGMVPHHQVHHDVSSNMISGAENVGYVNEISNTNGGHGNRFMGMDHCMDLDNYWPSY* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2309 371 Pfam No apical meristem (NAM) protein 34 160 IPR003441 GO:0003677|GO:0006355
Ahy20g2309 371 ProSiteProfiles NAC domain profile. 33 182 IPR003441 GO:0003677|GO:0006355
Ahy20g2309 371 Gene3D NAC domain 42 186 IPR036093 GO:0003677|GO:0006355
Ahy20g2309 371 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 20 368 - -
Ahy20g2309 371 SUPERFAMILY NAC domain 30 182 IPR036093 GO:0003677|GO:0006355
Ahy20g2309 371 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 20 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2309 Ahy-Chr20 126391564 126395032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2309 29 371 NAC Transcription Factor Family AT2G24430 52.394 5.45e-113 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ahy20g2309 NAM 4.40E-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2309 - - gmx:100805060 518.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2309 20 126391564 126395032 Ahy20g2309 20 126391564 126395032 ECH
Ahy20g2309 20 126391564 126395032 Ahy10g1840 10 102671441 102677521 hybridization