Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2276 ATGCAAATGCACTTCCCTGATGCTGTTATACCAATTGCCTTGATTCATAACATGATGCCAGATATTATATCCTACGCGAAAGCCATAATTCAAACTCGTCCTTCCGGATTCCTCTATGAAAGACCTGATTTTCGTTTGTTCAGTTTGTATCTGGACATTATTATCCAGAATCCTATATTGTACGTTGATGACTTGAATATCCAGAATTTGTCATTGGAAGTTGATGACTACGGCAACATGATCACCGACTTAATCATTGAAGAGTCCATGGAAGATCCTAATAATATTAAGATGGTTCCTGCATCGAAGAATGCCATTGAGTCTCTTGAGAAAGTGAAGCTTGAAAATAATAACCACCTAGCAGAGAGGTGCAGTATTTGTCTGACTGAATTTGATTATGGTGATGATGCAGAACAAGTTTCATCAATGCCTTGTAAGCATGTATATCATCAAGAGTGCCTCATCCAGTGGCTCAAGACTAGTCATTTGTGTCCTTTATGTCGCTATCCGATGCCAACTAATTAG 525 0.3867 MQMHFPDAVIPIALIHNMMPDIISYAKAIIQTRPSGFLYERPDFRLFSLYLDIIIQNPILYVDDLNIQNLSLEVDDYGNMITDLIIEESMEDPNNIKMVPASKNAIESLEKVKLENNNHLAERCSICLTEFDYGDDAEQVSSMPCKHVYHQECLIQWLKTSHLCPLCRYPMPTN* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2276 174 Pfam Ring finger domain 123 168 IPR001841 -
Ahy20g2276 174 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 173 IPR013083 -
Ahy20g2276 174 PANTHER F6A14.12 PROTEIN-RELATED 82 173 - -
Ahy20g2276 174 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 82 173 - -
Ahy20g2276 174 SMART ring_2 124 167 IPR001841 -
Ahy20g2276 174 SMART ringv_2 123 168 IPR011016 GO:0008270
Ahy20g2276 174 ProSiteProfiles Zinc finger RING-type profile. 124 168 IPR001841 -
Ahy20g2276 174 SUPERFAMILY RING/U-box 105 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2276 Ahy-Chr20 125009576 125010100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2276 86 172 C3H Transcription Factor Family AT1G18760 39.080 5.07e-20 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2276 - - aip:107621087 362.073