Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2209 ATGAGCATTACTGAACCAAATTACAACACCTCAGAAACCGAAAGCAGTAGTGCTTCAAACTCAACTACAAAAACTGTAACCGCAACCGCAACGGAAACCGCAACTGTAACCGTAACTGCCAAGCGCATTCGAGATTCTTCTAACAAACACCCCGTCTACCGGGGTGTACGGATGAGGAATTGGGGGAAGTGGGTATCTGAAATCAGAGAGCCACGCAAGAAGTCTCGTATATGGCTTGGAACATTCTCCACTCCGGAAATGGCCGCCAGGGCTCACGACGTCGCCGCCTTCAGCATAAAAGGCTCCGCCGCTATTCTTAATTTTCCCAACCTCGTACACTCCCTCCCCCGTCCCGCCTCCCTCGCCCCTCGCGACGTCCAAGCTGCGGCCGCAAAAGCCGCCAAAATGGTCAAATTCGATTCTCCGACGACGTCCTCCTCCTCGTCGGTGGAATTGTGCTCCGATGAGGAGGAGTTGAGCGAGATCATAGAGCTTCCCAGGCTGGAGAGTGGTGAGTTGGATAAGGAGTTTGTTTTCGCTGACTCCGTGGATGGGTGGATGTACCAGCCGCCGCCTTGGTTTTCGTCGGAGAGCATGGCGGTGGCGTCGACGGAGGAGGAGGACGTTGTTGAAGATGGTGTTGTAAGTGCTTCTGGAAGTTCGCTTTGGAATTATTATTATAATATTATTACTAATTAA 699 0.5179 MSITEPNYNTSETESSSASNSTTKTVTATATETATVTVTAKRIRDSSNKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAAFSIKGSAAILNFPNLVHSLPRPASLAPRDVQAAAAKAAKMVKFDSPTTSSSSSVELCSDEEELSEIIELPRLESGELDKEFVFADSVDGWMYQPPPWFSSESMAVASTEEEDVVEDGVVSASGSSLWNYYYNIITN* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2209 232 PRINTS Ethylene responsive element binding protein signature 75 91 IPR001471 GO:0003700|GO:0006355
Ahy20g2209 232 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700|GO:0006355
Ahy20g2209 232 ProSiteProfiles AP2/ERF domain profile. 52 109 IPR001471 GO:0003700|GO:0006355
Ahy20g2209 232 Gene3D AP2/ERF domain 52 110 IPR036955 GO:0003700|GO:0006355
Ahy20g2209 232 SUPERFAMILY DNA-binding domain 52 110 IPR016177 GO:0003677
Ahy20g2209 232 PANTHER DNA-BINDING DOMAIN-CONTAINING PROTEIN-RELATED 9 225 - -
Ahy20g2209 232 MobiDBLite consensus disorder prediction 1 28 - -
Ahy20g2209 232 CDD AP2 53 111 IPR001471 GO:0003700|GO:0006355
Ahy20g2209 232 Pfam AP2 domain 51 101 IPR001471 GO:0003700|GO:0006355
Ahy20g2209 232 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 9 225 - -
Ahy20g2209 232 SMART rav1_2 52 115 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2209 Ahy-Chr20 122945988 122947088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2209 16 196 AP2-EREBP Transcription Factor Family AT5G11590 56.650 9.31e-63 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy20g2209 AP2 7.00E-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2209 K09286 - cit:102608812 219.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2209 20 122945988 122947088 Ahy20g2209 20 122945988 122947088 ECH
Ahy20g2209 20 122945988 122947088 Ahy10g1771 10 99936968 99938165 hybridization
Ahy20g2209 20 122945988 122947088 Ahy16g2981 16 144656546 144657620 PCT