Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2195 ATGGAAGCTCAAGAGTTGTTTGAGCAGCAGCAAGACAATAATACCCCTAGTTCTGAGCATTTCATGGTTGAGGAATTCTTTGATTTCTCGAACGAAGAAGCAGCTACTGCTCCGTTTATTCCCAACACCACCACCAACTCCACCCACTCCTCCCCCACTGCCCTTGACAGCATCAATTCCTCTTCCTCGAACCCCAATTTCCTGACCGCCGACCTCTCCGTCCCGTACGATGATCTTGCTGAACTGGAATGGTTGTCCAATTTCACCGAGGAATCATTTTCGAGCGAGGACCTGCAGAGGATGCAGCTCATATCAGGCATAAAGGCCCGAAGCGACACCGAGGCCCGTGAATTCCACCACCAAGTCGAGCCCAACCGAGCCAACTCAATACTCAACCCACAACTGTCGGTTCCAGCTAAGGCCCGAAGCAAGCGCTCGCGTGGGCCTACATGCAACTGGAACTCCCGCCTCCTCGTGGTGTCCCCAACCACATCATCTTCCCAGCCCGAGCCCATGGCTCTTCCCAAGAAGCCCGTGGCAAGGAAGAAGGACAGCAGAGATGAAGAAGGGGAGGGCAGGAAGTGCCTGCATTGCGCCACAGACAAGACACCTCAGTGGCGGACAGGGCCCATGGGCCCAAAGACATTGTGCAATGCATGCGGAGTGAGGTATAAGTCGGGCCGGCTGGTGCCTGAGTATAGGCCGGCTGCCAGCCCGACTTTCGTGCTGACTAAGCACTCAAACTCGCACCGGAAGGTTCTGGAGTTGCGGCGCCAAAAGGAGATGATGCAGGCCCAGCAACAACATCAGCAGCAACTGCTTCATCATCACCATCACCAGAGCATTATGTTTGATGTCTCATCCAACGGTCAGGATTACTTGATCCATCAGCAACTGGGTCCCCATTTTGGCCACCTAATCTAG 924 0.5444 MEAQELFEQQQDNNTPSSEHFMVEEFFDFSNEEAATAPFIPNTTTNSTHSSPTALDSINSSSSNPNFLTADLSVPYDDLAELEWLSNFTEESFSSEDLQRMQLISGIKARSDTEAREFHHQVEPNRANSILNPQLSVPAKARSKRSRGPTCNWNSRLLVVSPTTSSSQPEPMALPKKPVARKKDSRDEEGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMMQAQQQHQQQLLHHHHHQSIMFDVSSNGQDYLIHQQLGPHFGHLI* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2195 307 ProSitePatterns GATA-type zinc finger domain. 195 220 IPR000679 GO:0006355|GO:0043565
Ahy20g2195 307 MobiDBLite consensus disorder prediction 39 62 - -
Ahy20g2195 307 MobiDBLite consensus disorder prediction 160 193 - -
Ahy20g2195 307 CDD ZnF_GATA 194 241 IPR000679 GO:0006355|GO:0043565
Ahy20g2195 307 Gene3D - 184 272 IPR013088 GO:0006355|GO:0008270
Ahy20g2195 307 Pfam GATA zinc finger 195 228 IPR000679 GO:0006355|GO:0043565
Ahy20g2195 307 PANTHER GATA TRANSCRIPTION FACTOR 10 307 - -
Ahy20g2195 307 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 190 253 - -
Ahy20g2195 307 ProSiteProfiles GATA-type zinc finger domain profile. 189 225 IPR000679 GO:0006355|GO:0043565
Ahy20g2195 307 MobiDBLite consensus disorder prediction 176 193 - -
Ahy20g2195 307 PIRSF Txn_fac_GATA_plant 1 285 IPR016679 GO:0003677|GO:0005634|GO:0045893
Ahy20g2195 307 SMART GATA_3 189 239 IPR000679 GO:0006355|GO:0043565
Ahy20g2195 307 PANTHER GATA TRANSCRIPTION FACTOR 10 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2195 Ahy-Chr20 122307677 122309277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2195 19 307 C2C2-Gata Transcription Factor Family AT4G32890 47.249 4.27e-88 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Ahy20g2195 GATA 2.70E-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2195 - - qsu:112029851 352.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2195 20 122307677 122309277 Ahy20g2195 20 122307677 122309277 ECH
Ahy20g2195 20 122307677 122309277 Ahy10g1749 10 99237141 99238739 hybridization