Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2193 ATGATGGCGGTGAGTTCGGGGAGCAAAGAAGGAGGAGGGAGTAAGGTGTTGATGGACAACGGCAAGTACGTGAGGTACACGCCGGAGCAGGTGGAGGCACTGGAGAGGCTCTACCATGAATGCCCCAAACCAAGCTCCCTTCGCCGCCAGCAACTCATCAGAGACTGCCCTATTCTCTCCAACATCGAGCCCAAACAGATCAAGGTCTGGTTCCAAAATCGAAGATGCCGAGAGAAGCAGCGGAAAGAGGCGTCACGGCTGCAAGCTGTAAACAGGAAGCTGACAGCAATGAATAAACTGCTGATGGAGGAAAACGACAGATTGCAGAAGCAAGTCTCTCACCTCGTCTATGAGAACACCTTTTTCCGCCAACACACTCAACAAAATCAGGCGGCGCTTGCCACCACAGACACCAGCTGTGAGTCGGTGGTAACAAGCGGTCAGCGCAACTTGACACCTCAGCATCCGCCAAGGGATGCAAGCCCTGCAGGACTTTTGTCGATTGCAGAGGAGACTTTAGCAGAGTTTCTATCAAAGGCCACTGGAACCGCTGTGGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCCCTGGAGTGGCAGCACGTGCATGCGGCCTTGTGGGTCTAGAACCTGCCAGGGTTGCAGAAATACTCAAAGATCGGTTATCATGGTATCGTGATTGCCGAACCGTGGATGTTCTAAATGTAATGTCCACGGGAAATGGAGGAACCATTGAACTTCTTTACATGCAGTTGTATGCTCCAACAACCTTGGCACCTGGCCGTGACTTCTGGTTGCTGCGCTACACATCTCTTTTGGAGGATGGTAGTCTGGTGGTGTGTGAAAGATCACTTAACAACACTCAGAACGGTCCTGCTATGCCAGCAGTGCAGCATTTTGTTAGAGCAGACATGATGCCAAGTGGGTATCTTATTAGGCCTTGTGAAGGAGGAGGGTCCATTATTCATATTGTTGATCACATGATCTTAGAGCCATGGAGTGTACCTGAAGTTTTGCGTCCACTTTATGAGTCGTCAATGCTACTTGCTCAAAGAACAACCATGGCGGCTTTACGGCATTTAAGGCAGATATCTCAAGAAGTTTCTCAGCCAAGTGTGACAGGATGGGGAAGAAGGCCTGCGGCTCTACGCGCGCTTAGTCAGCGATTGAGCAAGGGATTCAATGAAGCAGTTAATGGTTTTACTGATGATGGGTGGTCCTTGTTGGAGAGTGATGGCATTGATGATGTCACGCTTCTTGTGAACTCATCACCCAGCAAGATGATGGGAGCAAACCTCGGCTACAATGGTGGTGGATTCGCATCTGTCACCAGTTCTGTGCTTTGTGCCAAAGCATCCATGTTGTTGCAGAATGTCCCTCCAGCAATTCTTCTTAGATTCTTGCGGGAGCACCGGTCTGAGTGGGCTGATAGCAGCATTGACGCTTATTCGGCTGCCGCCATCAAAGCTGGTCCCTGTAACTTGCCTGGTGTCCGAGCAGGCGGTTTCGGGGGTCAGGTCATTCTTCCATTGGCTCATACAATTGAGCATGAAGAGTTCATGGAGGTGATTAAGCTTGAAAACATGGGTTACTATAGGGATGATATGACTATACCTGGTGATGTTTTCCTCTTGCAGCTCTGCAGTGGAGTGGATGAGAATGCAGTTGGCACAAGTGCAGAACTCATATTTGCTCCCATTGATGCATCCTTTTCTGATGATGCACCAATTTTACCTTCCGGCTTTCGCATCATACCTCTCGATTCAACCTCGGATGCCGCTAGTCCTAACCGGACGCTTGATCTGGCGTCGGCGCTGGAAGTTGGAACAGCAGGGAGCAAAGCTGGCGGCGAAAACTCAAGCCATTCTGGGAGCACAAAGTCGGTGATGACAATTGCATTTCAGTTTGCATTTGAAGTCCATCTTCAGGACAACATTGCAACCATGGCTAGGCAGTATGTTAGGAGTATCATTGCATCTGTTCAAAGGGTTTCACTAGCCCTTTCGCCGTCGCGATTCGGTTCTCAAAATGCTTTCCATTTGCCTCCTGGTACCCCTGAGGCACAAACACTTGCTAGGTGGATTTCTAGCAGCTATAGGTTCTATCTTGGGGTAGAACTGTTGAAGAGTGAGGGTAGTGAACCCATTCTCAAATCTCTTTGGCATCACACTGATGCTGTTTTGTGCTGCTCTCTCAAGGCATTACCTGTTTTCACTTTTGCAAATCAAGCTGGCCTTGACATGCTAGAAACAACTTTGGTTGCACTTCAAGACATCACTCTTGAAAAGATCTTTGATGACAATGGAAAGAAAACTCTCTGCTCTGAGTTCCCCCAGATAATGCAGCAGGGTTTCATGTGTATACAAGGTGGGATATGTTTGTCGAGCATGGGAAGGCCAGTGTCATATGAGAGAGCAGTGGCATGGAAAGTCTTGAATGAAGAAGAAACGGCTCACTGTATCTGCTTCATGTTCATCAATTGGTCTTTTGTCTGA 2535 0.488 MMAVSSGSKEGGGSKVLMDNGKYVRYTPEQVEALERLYHECPKPSSLRRQQLIRDCPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSHLVYENTFFRQHTQQNQAALATTDTSCESVVTSGQRNLTPQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPARVAEILKDRLSWYRDCRTVDVLNVMSTGNGGTIELLYMQLYAPTTLAPGRDFWLLRYTSLLEDGSLVVCERSLNNTQNGPAMPAVQHFVRADMMPSGYLIRPCEGGGSIIHIVDHMILEPWSVPEVLRPLYESSMLLAQRTTMAALRHLRQISQEVSQPSVTGWGRRPAALRALSQRLSKGFNEAVNGFTDDGWSLLESDGIDDVTLLVNSSPSKMMGANLGYNGGGFASVTSSVLCAKASMLLQNVPPAILLRFLREHRSEWADSSIDAYSAAAIKAGPCNLPGVRAGGFGGQVILPLAHTIEHEEFMEVIKLENMGYYRDDMTIPGDVFLLQLCSGVDENAVGTSAELIFAPIDASFSDDAPILPSGFRIIPLDSTSDAASPNRTLDLASALEVGTAGSKAGGENSSHSGSTKSVMTIAFQFAFEVHLQDNIATMARQYVRSIIASVQRVSLALSPSRFGSQNAFHLPPGTPEAQTLARWISSSYRFYLGVELLKSEGSEPILKSLWHHTDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDNGKKTLCSEFPQIMQQGFMCIQGGICLSSMGRPVSYERAVAWKVLNEEETAHCICFMFINWSFV* 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2193 844 CDD homeodomain 22 82 IPR001356 GO:0003677
Ahy20g2193 844 Gene3D - 202 383 IPR023393 -
Ahy20g2193 844 ProSiteProfiles START domain profile. 158 386 IPR002913 GO:0008289
Ahy20g2193 844 Pfam MEKHLA domain 703 843 IPR013978 -
Ahy20g2193 844 CDD bZIP 74 113 - -
Ahy20g2193 844 SUPERFAMILY Bet v1-like 167 378 - -
Ahy20g2193 844 CDD START_ArGLABRA2_like 162 377 - -
Ahy20g2193 844 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 8 844 IPR044830 GO:0003700
Ahy20g2193 844 Pfam START domain 168 376 IPR002913 GO:0008289
Ahy20g2193 844 ProSiteProfiles 'Homeobox' domain profile. 17 81 IPR001356 GO:0003677
Ahy20g2193 844 SUPERFAMILY Homeodomain-like 22 85 IPR009057 -
Ahy20g2193 844 SMART START_1 167 377 IPR002913 GO:0008289
Ahy20g2193 844 Coils Coil 77 111 - -
Ahy20g2193 844 Pfam Homeodomain 22 80 IPR001356 GO:0003677
Ahy20g2193 844 SMART HOX_1 19 85 IPR001356 GO:0003677
Ahy20g2193 844 Gene3D - 15 88 - -
Ahy20g2193 844 PANTHER CLASS III HD-ZIP PROTEIN CNA1 8 844 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2193 Ahy-Chr20 121985250 121991797 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2193 11 844 Homeobox Transcription Factor Family AT4G32880 80.072 0.0 1400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ahy20g2193 START 1.40E-51 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2193 K09338 - gmx:100797291 1575.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2193 20 121985250 121991797 Ahy20g2193 20 121985250 121991797 ECH
Ahy20g2193 20 121985250 121991797 Ahy10g1748 10 99014670 99021424 hybridization