Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2178 ATGTCAACTCAGAAAGTCTCAATCTCTTCACTCAAATTCAAAAGGTCCATGGATGCTAATAATAACAACAGCAGTAAGCAACAAGGTCCTCCAAAAGGCGGTGAAATAAGCATGTGGGAGAAGCAAACAACAGAAGTGGTGGTTGCGATTCCAAGCGAGAGCCAAGATTCCAAAGGGGTTACTGAATCTTTGACACCAAAGCATAGCAGTAGAGTTGACTCCCCTCTCACAATGCACAACAACGACAACAATGATGCTGCTTCAGTGTATGGAACCTCAAAGTCACCACCTTTGAACTGTGCTTCCCCTGAAATAAGGTTCATGCCAAGCCCTAACAAGCCCCCAAGAATTCCCAATTCAAATGCAAACCTTGTCAGAAGGAAATCACTTTCAAGGTCAGTGTATTCCAAACCCAAATCAAGGTTTGGTGAACAGCCTTATCCCATTGATGGTTCTGTTTTAGATGACAGTAATGTTAATGGCATTTCAACTTTGCAAGAACAGTTAGCTGGTAACTCACCGTATAGGACCTCATTCAAAGCATCATCGCCTAATAACAAACCTGGGACTGTTAATAGAACAGTTTCCATCACTTCCGTGACTCCCAAGACGCCTTTGATGGCGTCTCCCGGTCCTGCCGGGGAGGATGAGGATGAAATCATTTACAAGAAAGTTGAATTGAGTAAAGAGAAGCGTAAGAGAGTGACCACTATGGTTTTGATTGAATGCGTTGTGTTTGTGTGCCTTGCTGGTACCTTGATAGCTAGCTTGACAGTTGAAAAGCTCAGGGCGACGATGATTTGGGGGTTGGGGATTTGGAGATGGTGCGTTCTTGTGTTGGTGACATTTTGTGGCATGTTAGTTACAAGATGGTTTATGCACATTGTTGTTTTCTTGATTGAGATGAACTTTCTGTTGAGGAAAAAGGTGCTCTATTTTGTCCATGGACTGAAGAAATCTGTTCAGGTCTTCATTTGGCTCGGTTTAGTTCTTCTCACATGGGTGCTACTAATCAATCGTGGCGTGGCGCGATCTAAATTAGCCTCGAAAATCTTGGATGGAGTGACATGGACTCTTCTTTCCCTTCTAATTGGAGCATTCTTGTGGTTGATAAAGACATTGCTGCTGAAGATTTTGGCATCGAATTTCCATGTCAAGTCTTTCTTTGATCGGATTCAAGAATCGATATTCCATCAGTACATTTTGCAGACTCTGTCTGGGCCTCCGCTTATAGAAGAAGCTGAGAAGGTTGGGGGATCATTAAGTATTGGTCAATTTAGTTTCAAAAGTACAACAGGTAAAGGTGGCACAAAGAAAGAGGTTATTGATATGGCAAAGCTTCATAAGATGAAACAAGAGAAAGTTTCAGCCTGGACTATGAAGAATTTGATAGATGCTGTGACAAATTCAGGTCTGTCCACGATCTCTAATTCACTAGACGAAAGTTTCGACGATGGAGTGACTGAGCAAACTGATAAAGAGATTACAAATGAGATGGAAGCCACTGCTGCCGCCTATCTCATCTTCAGGAATGTTGCTGCCCCCGGTTGCACGTATATTGATGAGTATGAACTGAGGAGGTTTATGATCAAGGAAGAAGTTGATTTAGTATATCCTCAATTGGCACAAGCAGAGACAGGGCAAATTACTAGAAAGTCATTAGCAGATTGGGTGTTGAAGGTATATCAAGAACGAAAAGCATTGGCACATGCCTTAAGTGATACGAAAACAGCCGTAAGACAATTGAACAAACTTGTGACAGGGATCCTAGTGGTTGTGACCATAGTAATTTGGCTTCTACTGATGGAGATTGCAACAACAAAAGTACTTGTTTTCCTCTCTTCGCAGCTAGTACTTGCCGCTTTCATGTTTGGAAATACATGCAAGAACATTTTTGAAGCTATCATCTTCGTGTTTGTGATGCATCCATTTGATGTTGGTGACCGATGTGTTGTAGATGGTGTGGAGTTATTGGTTGAAGAAATGAACATACTGACAACAGTGTTCTTGAAGCTGAATAATGAAAAGGTGTACTATCCAAACTCAGTCCTTGCCATGAAACCAATTAGCAATTATTATAGAAGCCCGGATATGGGTGATGGAGTAGAATTTGCCATCGATTTTTCGACGCCAGCAGAGAAGATCGGTGCACTGAAAGAAAAGATAAAGAGGTACTTGGAGAGGAATCCACAATACTGGCATCCTAATCACGGGTTAGTAGTGAAGGAGATTGAGAATGTGAACAAGATTAAGATGGGTGTGTATGTGGTGCACACAATGAACTTTCAAGAGTTTGGGGAGAAGAACAAGCGAAGAACTGAACTAGTGATTGAATTGAAGAAGATATTAGAAGAGCTAGATATCAGATACAACCTTCTTCCACAAGCTGTTCATGTTAGCCATGTTGAATCAAATACAAGTCCACTCAAGAGATAA 2436 0.4158 MSTQKVSISSLKFKRSMDANNNNSSKQQGPPKGGEISMWEKQTTEVVVAIPSESQDSKGVTESLTPKHSSRVDSPLTMHNNDNNDAASVYGTSKSPPLNCASPEIRFMPSPNKPPRIPNSNANLVRRKSLSRSVYSKPKSRFGEQPYPIDGSVLDDSNVNGISTLQEQLAGNSPYRTSFKASSPNNKPGTVNRTVSITSVTPKTPLMASPGPAGEDEDEIIYKKVELSKEKRKRVTTMVLIECVVFVCLAGTLIASLTVEKLRATMIWGLGIWRWCVLVLVTFCGMLVTRWFMHIVVFLIEMNFLLRKKVLYFVHGLKKSVQVFIWLGLVLLTWVLLINRGVARSKLASKILDGVTWTLLSLLIGAFLWLIKTLLLKILASNFHVKSFFDRIQESIFHQYILQTLSGPPLIEEAEKVGGSLSIGQFSFKSTTGKGGTKKEVIDMAKLHKMKQEKVSAWTMKNLIDAVTNSGLSTISNSLDESFDDGVTEQTDKEITNEMEATAAAYLIFRNVAAPGCTYIDEYELRRFMIKEEVDLVYPQLAQAETGQITRKSLADWVLKVYQERKALAHALSDTKTAVRQLNKLVTGILVVVTIVIWLLLMEIATTKVLVFLSSQLVLAAFMFGNTCKNIFEAIIFVFVMHPFDVGDRCVVDGVELLVEEMNILTTVFLKLNNEKVYYPNSVLAMKPISNYYRSPDMGDGVEFAIDFSTPAEKIGALKEKIKRYLERNPQYWHPNHGLVVKEIENVNKIKMGVYVVHTMNFQEFGEKNKRRTELVIELKKILEELDIRYNLLPQAVHVSHVESNTSPLKR* 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2178 811 Pfam Mechanosensitive ion channel 584 789 IPR006685 GO:0016020|GO:0055085
Ahy20g2178 811 Gene3D - 643 692 IPR023408 -
Ahy20g2178 811 MobiDBLite consensus disorder prediction 47 97 - -
Ahy20g2178 811 SUPERFAMILY Sm-like ribonucleoproteins 633 692 IPR010920 -
Ahy20g2178 811 MobiDBLite consensus disorder prediction 1 31 - -
Ahy20g2178 811 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 9 69 800 - -
Ahy20g2178 811 PIRSF Memb_At2g17000 4 810 IPR016688 -
Ahy20g2178 811 MobiDBLite consensus disorder prediction 130 149 - -
Ahy20g2178 811 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 69 800 IPR016688 -
Ahy20g2178 811 MobiDBLite consensus disorder prediction 1 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2178 Ahy-Chr20 120653710 120657540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2178 93 800 Mechanosensitive Ion Channel Family AT5G12080 61.376 0.0 872
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2178 K22048 - gmx:100803107 1169.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2178 20 120653710 120657540 Ahy20g2178 20 120653710 120657540 ECH
Ahy20g2178 20 120653710 120657540 Ahy10g1730 10 98253075 98256225 hybridization