Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2160 ATGACCATGACGACTCAACTCCTCAAGCTCAATCTCTACCCGAAATCCAACATCTCCTTCAACCACGCACCAAATCGTCATGTTCAGTTCCTTCCCCTTCTTCCCACTAATCACCGTCGCAACGACATTCACCGCAACTGCCACCGCCCGGGATTCCTCCGGTCACATTTCCTCGTATCTAACTCGTCACGCACCGAGATTGCCTCGCCGGAGCCAGCTCAGCTAAAGACTACAGACTCCCCGCTCCTGCTCGACGTCTCCGGTATGATGTGCGGCGCCTGCGTCTCACGAGTCAAGAACATCCTCTCCGCCGATGACCGAGTTGACTCGGTCGTGGTCAACATGTTAACCGAGACCGCCGCCGTCAAGCTCAGGCGGCTCGACGAGGAGAAAGATGTGGAGGAGCCGGCGACGGTTGCGGAGAGCCTGGCCCGGAGGCTGACCGAGTGCGGTTTTCCGACGAAACGAAGGGCGTCGAGTTTGGGAGTTGCAGAGAACGTCAGGAAGTGGAAGGAGCTTGTGAAGAAGAAGGAGGAACTCGTCGCCAAAAGCCGCAGCCGTGTCGCTTTTGCTTGGGCTTTGGTGGCGCTGTGCTGTGGATCTCACGCTTCGCACGTTCTTCATTCTTTGGGGATTCACATTGGTCATGGATCGGTTTTGGAAATTCTTCACAATTCATATGTGAAAGGTGGTATAGCTCTGGGGTCTCTCTTGGGACCAGGACGAGAGTTACTCTTTGATGGCCTAAACGCATTTAGGAAGGGATCACCAAACATGAACTCTCTTGTGGGATTTGGTTCTATAGCTGCTTTTATCATCAGTTCGATATCACTACTGAACCCCGGGTTGGCCTGGGATGCAACATTCTTTGATGAGCCGGTCATGCTTCTTGGTTTTGTGCTTCTTGGACGTTCTTTGGAGGAAAAGGCAAGGATTCAGGCATCTAGTGATATGAATGAACTCCTTTCATTGATATCTACTCAGTCAAGACTTGTGGTTACTTCATCGGAAGGTTCACCATCTACAGAGAGTGTGCTCGGTTCTAACACAATTTGCGTTGAAGTCCCAACTGATGATATCCGAGTAGGTGACTCAGTGTTGGTGTTGCCTGGAGAGACTATTCCTATAGATGGAAAGGTCATTTCAGGAAGAAGTGTTGTGGATGAATCCATGCTTACTGGAGAATCACTTCCTGTATTTAAGGAGGAAGGCCTCACAGTTTCTGCAGGAACTATAAATTGGGATGGACCTTTAAGGATTGAAGCTTCTTCATCTGGCTCCAACACAATGATATCCAAGATTGTACGCATGGTTGAGGATGCCCAGTCACGTGAAGCACCTGTACAGAGGCTTGCTGATTCCATAGCAGGGCCATTTGTATACAGCGTAATGACTATGTCAGCAGCAACATTTGCATTTTGGTACTATATTGGATCAAACATATTTCCTGATGTTTTGCTCAATGATATTGCGGGCCCAGAAGGGGATCCTTTGCTTTTGAGTTTAAAGCTTGCTGTAGATGTTTTGGTTGTCTCTTGCCCTTGTGCACTGGGTCTTGCCACACCTACAGCGATCTTGGTTGGCACCTCCCTTGGGGCAAGAAAAGGACTTCTTATTAGAGGGGGAGATGTGCTAGAACGCTTGGCCAGTATAAATTATATTGCCCTTGACAAGACCGGAACCCTCACCAAAGGAAAACCAGTTGTCTCCTCGGTGAGCTCTATTAATTATGGAGAATCAGAAATACTTCAGATTGCTGCTGCGGTGGAGAAAACAGCATCTCATCCAATTGCAAAGCTATTATCAATAAAGCTGAGTCATTAG 1824 0.4868 MTMTTQLLKLNLYPKSNISFNHAPNRHVQFLPLLPTNHRRNDIHRNCHRPGFLRSHFLVSNSSRTEIASPEPAQLKTTDSPLLLDVSGMMCGACVSRVKNILSADDRVDSVVVNMLTETAAVKLRRLDEEKDVEEPATVAESLARRLTECGFPTKRRASSLGVAENVRKWKELVKKKEELVAKSRSRVAFAWALVALCCGSHASHVLHSLGIHIGHGSVLEILHNSYVKGGIALGSLLGPGRELLFDGLNAFRKGSPNMNSLVGFGSIAAFIISSISLLNPGLAWDATFFDEPVMLLGFVLLGRSLEEKARIQASSDMNELLSLISTQSRLVVTSSEGSPSTESVLGSNTICVEVPTDDIRVGDSVLVLPGETIPIDGKVISGRSVVDESMLTGESLPVFKEEGLTVSAGTINWDGPLRIEASSSGSNTMISKIVRMVEDAQSREAPVQRLADSIAGPFVYSVMTMSAATFAFWYYIGSNIFPDVLLNDIAGPEGDPLLLSLKLAVDVLVVSCPCALGLATPTAILVGTSLGARKGLLIRGGDVLERLASINYIALDKTGTLTKGKPVVSSVSSINYGESEILQIAAAVEKTASHPIAKLLSIKLSH* 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2160 607 Pfam E1-E2 ATPase 340 535 - -
Ahy20g2160 607 Gene3D - 566 601 IPR023299 GO:0000166
Ahy20g2160 607 PRINTS P-type cation-transporting ATPase superfamily signature 555 569 - -
Ahy20g2160 607 PRINTS P-type cation-transporting ATPase superfamily signature 388 402 - -
Ahy20g2160 607 Gene3D - 75 158 - -
Ahy20g2160 607 PANTHER ATP7, ISOFORM B 79 599 - -
Ahy20g2160 607 CDD HMA 84 153 IPR006121 GO:0046872
Ahy20g2160 607 Gene3D - 546 565 IPR023214 -
Ahy20g2160 607 ProSiteProfiles Heavy-metal-associated domain profile. 81 156 IPR006121 GO:0046872
Ahy20g2160 607 SUPERFAMILY Calcium ATPase, transmembrane domain M 291 549 IPR023298 -
Ahy20g2160 607 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 557 599 IPR023299 GO:0000166
Ahy20g2160 607 Pfam Heavy-metal-associated domain 84 152 IPR006121 GO:0046872
Ahy20g2160 607 SUPERFAMILY HMA, heavy metal-associated domain 83 124 IPR036163 GO:0046872
Ahy20g2160 607 ProSitePatterns E1-E2 ATPases phosphorylation site. 557 563 IPR018303 -
Ahy20g2160 607 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 349 585 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ahy20g2160 607 Gene3D - 311 442 - -
Ahy20g2160 607 SUPERFAMILY Calcium ATPase, transduction domain A 349 438 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2160 Ahy-Chr20 120042871 120051234 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2160 241 607 Primary Pumps ATPases AT5G44790 38.710 1.34e-69 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2160 K17686 - gmx:100127402 937.562
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2160 20 120042871 120051234 Ahy20g2160 20 120042871 120051234 ECH