Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2158 ATGGATAATCCTTGCTTTGTTGTACCGTACCATGATCCATATGATACTCCTCCACTCAGTCCGAGTTTTTTCAACATTTCCAACCCCACTCTTCTCGATCTTACCAATGTCGCCAGTGGAAACGAATCCAGTCACTCTCAACAAAAGAATAATATAATTCAAGATGGTAATCTCCAACCAACTTTTGATCCGATGATTCAAGATAGTAACTTTGTTGGAGGAACAGGAGGGAATAACTTCGAATCAATTCCTTTGTTACAAGTGCATTCTGAGGAAGGTCTATCGCATGATTTCAACAACAATGTGAATACAATTACGCTGTCTCATTGGCCCCTGCCACCAGTCCCATTTTCTTGTAGCTGTTGTAGTGTCCTCAGGGAAATTGTTCACACCAATGGATTTAACTTTAAGAAAGTTGAAATTCATGGAAGGCCTGGCTTGATCTCTCATGCAATTCAACATCCTAGTGTGAATGGAGATTATACTTCCACTAGCAACCTTCAATATCAAATGATTGATTTTTGTAGGAGAGGCATTGATGACGTGAAGAATTTCCTAGTTGAGTATTGCAGAGTACAAAGTGCAGCAGGGTACTTTATGTTGCAAGATCCACTTTCTGCTTATTATGAGGCCCTATGCACTGGACTTGAATGGGTCGAAGAGTTCAGCGACGACACTGACGATTTGAATGCAAGCAATTCAGATGATGAGAATGAACAAGTGGCTGACAATGGAGTAGGAGCATCAGGAAAGGCTCCTAGAAGATTATCTCTTTCGGAACAGAGGGATAGAGCGGGGAAGATGAAATTGGATGATTTTGCCCCTTATTTTCATTTTCCAATTGAGGAAGCATCGAGGCAAATGAATATCTGTCCCACCGTAGTGAAGAAAATTTGCCGTAAGGAAGGATTATCACGATGGCCTTACAGAAAGATCAAAAGCACTGTAAGGCAGATCTCGCAACTTAAGAGAACGATGGAATCAAAAGATGTAAGGTCAAAGGCAAGGATTCAGGCAGAGATTTACAGGCTCCATCTAAAATTAAGAGAGATTTGTGCTGGACGATACCCATCTGGATTAGTTATACCATGA 1092 0.4103 MDNPCFVVPYHDPYDTPPLSPSFFNISNPTLLDLTNVASGNESSHSQQKNNIIQDGNLQPTFDPMIQDSNFVGGTGGNNFESIPLLQVHSEEGLSHDFNNNVNTITLSHWPLPPVPFSCSCCSVLREIVHTNGFNFKKVEIHGRPGLISHAIQHPSVNGDYTSTSNLQYQMIDFCRRGIDDVKNFLVEYCRVQSAAGYFMLQDPLSAYYEALCTGLEWVEEFSDDTDDLNASNSDDENEQVADNGVGASGKAPRRLSLSEQRDRAGKMKLDDFAPYFHFPIEEASRQMNICPTVVKKICRKEGLSRWPYRKIKSTVRQISQLKRTMESKDVRSKARIQAEIYRLHLKLREICAGRYPSGLVIP* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2158 363 Pfam RWP-RK domain 268 314 IPR003035 -
Ahy20g2158 363 PANTHER PROTEIN RKD4 3 354 IPR044607 GO:0003700
Ahy20g2158 363 MobiDBLite consensus disorder prediction 227 263 - -
Ahy20g2158 363 ProSiteProfiles RWP-RK domain profile. 248 335 IPR003035 -
Ahy20g2158 363 PANTHER RWP-RK DOMAIN PROTEIN 3 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2158 Ahy-Chr20 120024608 120026899 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2158 268 328 NLP Transcription Factor Family AT4G24020 45.902 1.09e-13 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Ahy20g2158 RWP-RK 6.50E-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2158 - - adu:107470643 708.753