Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2135 ATGGATTCATCAAACCAGAACCAACCTTGTCCCAACCGAACTTTTAATCACTTATACACAGAACCTTGTGCTGAGGAATCAGAATCAGGTTCACTCCCTTCCGAGACACCCCAGACCATGGACCCTAGAGGGTATCAATTAGAAGTATTTGAAGTTGCAAAGAAGAGGAACACAATAGCAGTATTGGATACAGGTGCTGGTAAGACCTTAATAGCTGTGTTGCTTATGAAGAACATTGGTCAAGCTATCAGGTCCAGTGGCTCGAAAAAGTTGATTATTTTCTTAGCTCCAACCGTTCATCTTGTCAACCAGCAATATAAGAATATAAAAGATCTTACAGATTTTCAAGTTCAGGAGTATTATGGGGCAAAAGGAGTGGACGCATGGGATTTAAGTATCTGGGAGAAGGAAATTAGTGAAAATGAGGTACTGGTTATGACACCCCAGCTTCTTTTGGACGCTCTAAGAAAGGCTTTCTTGAAGATGGAATCAATATGCTTGATGATTATTGATGAGTGTCATCGAGCAACTGGTAACCATCCCTATGCAAAAGTAATGAAGGAATTCTATCACAAGGCTGATGAAAAGCCTAAAATTTTTGGAATGACAGCATCACCAGTAGGTAAAAAAGGTGTTTCCTCTTCTGTGGATTGTGAGGGTCAGATATCAGAACTGGAAAGTATCTTGGATTCTCGGAGATATACTGTAGAAGATAGGACCGAGATGGAGGTATATATACCTTCTGCAAAAGAAAGTTGTAGATATTATGACCAGGCACAATTCCCTGATTTGAATTTGAAGCCAAAGATTGAAGACTTGTGGTCCAAGTCTGGTGCATTGTTATCGGAATTACAAAGCTCAACTGATGGTAACTCTAAGGATGTGGAGAATAAATTAAATACGCTGCATAAGCGGATGTCCAATGAACTTGCAAGAGTCTTGTATTGCCTTGAAGATCTTGGCCTCCTATGTGCTTATGAGGCTGTTAAAATATGGCATGAAAATTTCTCCAAAGTCGAAGGAGAGTGTGAAGTTTACCGAAAAGGTTTTAGTCAGTGCAAAGCATTCATTGACGTAGTCATGCAAATAGTTGAAGAATCCCTCCATCTTGATGATAACAAGATTCCAGAGCTTGATCTTAATTTTTCAAAGGCAGTAGACCTGGGATACTTATCTCCCAAATTACTTGAACTTATTAAACTCTTCCAGTCATTTGGACATTCATGTGAGGTATTGTGCCTTGTTTTTGTCGAAAGAATCATCACAGCAAAGGTGATTGAAAGATTTATAAAGAAAGTTCCACAGATATCTCATTTTACAGTTTCCTATTTAACCGGAAACAATACGTCAGCTGGTTCACTGACTGCTAAGAAGCAGAAGGAAACATTGGATTCTTTTCGTTCTGGAAAGGTCAATATATTATTTACAACCGAGGTAATTGAGGAAGGAATTCATGTGCCAAAGTGCTCATGTGTGATACGTTTTGACCTACCGAACACATGTCGCAGTTATGTCCAGTCTCGGGGAAGATCTAGGCAGGATGACTCCCAATTTATTGTGATGTTGGAGAGGGGAAACATGGATCAAAGAAATAAACTGTTTGACATCATCAGGAGTGAGCGATCCGTGACTGAAGCGGCTATATATAAAGAAGATCATGCTTCTAATTTAAGGGTGATTACGGAAGTAAAATCAAATATATATTATGTTGAGTCTACTGGAGCATCAGTCAACTTGGACTCAAGTGTTAGTCTTTTAAATCGATATTGTGAAAAGCTCCCATGTGATGAGTACCCCCGTGCAAAGCCCAATTTTGAATTCCTGCCTTTTGAAGGGGCATACAGGTGTAAATTAACATTACCACCTAATGCAGCTTTCCAAACAATAGTCGGTCCCTTGGGTAAAGATGTCCGTTTGGCAAGGAATCTTGTCTGTTTAGAAGCTTGTAAGAAGCTGCATCAGATGCATGCCTTGAATGATCATCTTGTCCCTTTCACTGAAAAGCCTCCAGAAGCTGAACATAGTGTGCAAAACCAAGAATCTGGTACAGGATCAGGTGCAGGAACCACAAGAAGAAAAGAATTACATGGCACAGCCAGCATTCGAGCTTTATGTGGTACAATTGAAGACAAACTAGACGGAGCCAAATTTTATGCCTATAGATTTGATTTCAAATGCAGCATTGTCGGTGAAATCTTCTCAGGATTTGTTCTCCTGATTGAGTCAAAGTTTGACGATGATGTTGGAAATATTGAATTAGATCTTTATTTGATAAAAAAAACCGTAAAGGCTTCCTTATCTTTCTGTGGACAAGTTTATTTGAATGCTGAACAGATGATGTATGCAAAATGCTTCCATGAGGTTTTTTTCAATGGTTTGTTTGGGAGATTGGTTCATAAGTCCAAATCAGTAAAAGGAGAGAGGGAATTCTTGCTTCAGAAAGACACAAAATCACTGTGGAGTCCACACTTCTATTTGCTTCTACCACTACAAAAAGGGGATGATGAATCTAAAGGATCTTTGGAAATAAATTGGTCTGGAATAAGTTCTTGTGCTCCTGCAGTTGAATTTTTAAGGAACAAGTTTTCACTGGTTGCTGGAGATTATGATGGGGGCAGTAAAATTGTGTCACCTTGTGATGCTAATTCATCAAAGGTGGCCTGTGAAGGCACAGATAAAATTCACTTTGCCAATTGTGTAGTTGATGCTAACAGTATAAAGAATCGGGTAGTTTTGGCTATTCACACTGGAAGAATGTATTGTATTCTTGAAGCAGATAACAAGCTATGCGCTGAAAGTCCGTTTGATGGAAACGATGAGAAGTCTCCAGAGAACCACATGACCTTCGCAGAATACTTCAAGAAAAGCTATGGGATTGCTATGAAACATCCAGGACAACCTTTATTACGTTTGAAGCAAAGTCATAATGCACACAATGTTCTTTTGAATTTCTATGAGGAAGATGAGAAGGATAAGTCATCGCAAATTGGCCCAGCAAACACCAAAATGCCTGCGCATGTTCACATTCCACCTGAGCTTTTATTTATTCTTGATGTTAAAAGACATGTTTTAAAGTCAATGTACTTGCTACCATCATTGATGCATCGTCTTGAATCTCTCACGTTGTCCAGTCAGCTTAGACGAGAGATAGATGGTCAGAGTAGCAATATCAGCATACCTAGCTCTCTGATTCTAGAAGCACTGACAACCTTAAGATGCTGTGAAAATTTTTCAATGGAACGTCTTGAGTTGCTAGGAGATTCTGTTCTTAAGTTTGTAGTGAGCTGTCATCTCTTTCTTAAATATCCTAAGGAACATGAAGGAAAATTATCTGATAGACGGAAGTGGGCTGTTTGTAATTCAACTCTGCATAAACTGGGAATAAATCGCAAATTACAGGGCTATATCCAAGATTCTGCATTTGAACCACGCCGTTGGGTTGCTCCAGGACAGCGTTCTATACATGTTGTTTCTTGTGAATGTGGGGTGGAAACCCCAGAAGTTCCTGTGGATGGAAAATTCCAGACTGAAGATCCAAAAGTTGTGGTCGGAAAGCTTTGTGACCAGGGTCACCGCTGGATGTGTTCAAAGACAATTTCTGATTGTGTTGAAGCTCTTATAGGAGCATACTATGTAGTTGGCGGATTGATTGCTGCACTACATGTCATGAAGTGGCTTGGCATTGATTCTGAGCTAGAACCGTCCTTGGTTGAGGAAGCCATTGCTGCTGCATCTCTCCATACATATGCACCAAAACAAGACGAGATTGCAACCCTTGAAATGAAAATTGGGTATAAATTTTCTGTTAAGGGACTCTTACTGGAGGCAATGACACATGTATCTGAGGCTGAACTTGGGATTGGTTGCTGCTACGAGAGGCTTGAATTTCTCGGCGACTCTGTATTGGATCTTCTTATTACATGGCATCTTTATCAGAGCCATAAAGATATTGATCCAGGAGAGCTGACTGACTTGCGTTCTGCTTCTGTCAATAATGACAATTTTGCTCAAGTTGCCGTTAGACGAAACCTTTACCCACACCTTCTGCTCAGCTCTGGAGATTTGGTGAGCCAGATATCAGAATATGTTAAGGTCATTTCTGAATCAGAGAGCAGTACCAGATCACTCCCAGGCATTAAAGCCCCCAAGGCACTTGGAGATCTAGTGGAAAGTATTGCTGGGGCTATACTAGTTGATACCAAGCTCAATCTTGATGAAGTGTGGAGAATTTTCAATCCTCTGTTGTCTCCCATTGTTACCCCTGATAAACTTGAATTGCCTCCGTTGCGTGAACTAATTGAATTATGTGGCTCTCTTGGATATTTTATCAAAGAAAATTGTAAAAGGAAGGGAACTACTGTGCATGCTGAGCTTAGTGTACAACTGGAAAACACACTCTTAGTTCGGAAGGGAAACGGAATGACTAAAAAAATAGCAAAAGGAGAAGCTGCATTTCACTTGTTGAAAGATCTCAAGAAGAAGGGAATTTCACATGGCAGTAGCGTGCCAAAGAGAAAAAGAGAGAATCCTGACTATCTATGCGATTCGTCTAATCCAGAAACCAATATTGGTATTTGCACTGCTCTAACAGATGGACATTCGTCAAAGACAGTAGCGAATAAGAGGGCGAAAGTGGATGAAACTAACACAGAAGAAATTGCATCTGCTGTTTCTTTGCCCCACAAAGACTCATCTCCTGAGGACTCTGATTCCATTCCAGTTATTGCATCTATCAATATGAAGAAAGGAGGACCCCGAACCACACTATATGAACTGTGCAAGAGATTACAGTGGCCATTGCCAGAATATGATTCAACAGAGTATAAAGATAGATCCCTGTTTGAATCCAGCGAAGGCCTGGAAGGAACAAAGGGAGTCAACTGCTTTGTGTCAAAAATAACCTTGTGCATACCGAATGATGGTAATATAGAATGCACAGGAGAAGCTAGAGCTGATAAGAAGAGTTCATATGACTCTGCTGCAGTTAAAATACTTCATGAGCTGCAACGACTGGGGAAGCTTAAGATTGATGATGCTTAG 5040 0.4022 MDSSNQNQPCPNRTFNHLYTEPCAEESESGSLPSETPQTMDPRGYQLEVFEVAKKRNTIAVLDTGAGKTLIAVLLMKNIGQAIRSSGSKKLIIFLAPTVHLVNQQYKNIKDLTDFQVQEYYGAKGVDAWDLSIWEKEISENEVLVMTPQLLLDALRKAFLKMESICLMIIDECHRATGNHPYAKVMKEFYHKADEKPKIFGMTASPVGKKGVSSSVDCEGQISELESILDSRRYTVEDRTEMEVYIPSAKESCRYYDQAQFPDLNLKPKIEDLWSKSGALLSELQSSTDGNSKDVENKLNTLHKRMSNELARVLYCLEDLGLLCAYEAVKIWHENFSKVEGECEVYRKGFSQCKAFIDVVMQIVEESLHLDDNKIPELDLNFSKAVDLGYLSPKLLELIKLFQSFGHSCEVLCLVFVERIITAKVIERFIKKVPQISHFTVSYLTGNNTSAGSLTAKKQKETLDSFRSGKVNILFTTEVIEEGIHVPKCSCVIRFDLPNTCRSYVQSRGRSRQDDSQFIVMLERGNMDQRNKLFDIIRSERSVTEAAIYKEDHASNLRVITEVKSNIYYVESTGASVNLDSSVSLLNRYCEKLPCDEYPRAKPNFEFLPFEGAYRCKLTLPPNAAFQTIVGPLGKDVRLARNLVCLEACKKLHQMHALNDHLVPFTEKPPEAEHSVQNQESGTGSGAGTTRRKELHGTASIRALCGTIEDKLDGAKFYAYRFDFKCSIVGEIFSGFVLLIESKFDDDVGNIELDLYLIKKTVKASLSFCGQVYLNAEQMMYAKCFHEVFFNGLFGRLVHKSKSVKGEREFLLQKDTKSLWSPHFYLLLPLQKGDDESKGSLEINWSGISSCAPAVEFLRNKFSLVAGDYDGGSKIVSPCDANSSKVACEGTDKIHFANCVVDANSIKNRVVLAIHTGRMYCILEADNKLCAESPFDGNDEKSPENHMTFAEYFKKSYGIAMKHPGQPLLRLKQSHNAHNVLLNFYEEDEKDKSSQIGPANTKMPAHVHIPPELLFILDVKRHVLKSMYLLPSLMHRLESLTLSSQLRREIDGQSSNISIPSSLILEALTTLRCCENFSMERLELLGDSVLKFVVSCHLFLKYPKEHEGKLSDRRKWAVCNSTLHKLGINRKLQGYIQDSAFEPRRWVAPGQRSIHVVSCECGVETPEVPVDGKFQTEDPKVVVGKLCDQGHRWMCSKTISDCVEALIGAYYVVGGLIAALHVMKWLGIDSELEPSLVEEAIAAASLHTYAPKQDEIATLEMKIGYKFSVKGLLLEAMTHVSEAELGIGCCYERLEFLGDSVLDLLITWHLYQSHKDIDPGELTDLRSASVNNDNFAQVAVRRNLYPHLLLSSGDLVSQISEYVKVISESESSTRSLPGIKAPKALGDLVESIAGAILVDTKLNLDEVWRIFNPLLSPIVTPDKLELPPLRELIELCGSLGYFIKENCKRKGTTVHAELSVQLENTLLVRKGNGMTKKIAKGEAAFHLLKDLKKKGISHGSSVPKRKRENPDYLCDSSNPETNIGICTALTDGHSSKTVANKRAKVDETNTEEIASAVSLPHKDSSPEDSDSIPVIASINMKKGGPRTTLYELCKRLQWPLPEYDSTEYKDRSLFESSEGLEGTKGVNCFVSKITLCIPNDGNIECTGEARADKKSSYDSAAVKILHELQRLGKLKIDDA* 1680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2135 1679 MobiDBLite consensus disorder prediction 669 691 - -
Ahy20g2135 1679 SMART PAZ_2_a_3 880 1042 IPR003100 GO:0005515
Ahy20g2135 1679 Gene3D paz domain 889 1016 - -
Ahy20g2135 1679 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 582 672 IPR005034 GO:0016891
Ahy20g2135 1679 Gene3D - 1591 1670 - -
Ahy20g2135 1679 SMART helicmild6 424 514 IPR001650 -
Ahy20g2135 1679 Pfam Helicase conserved C-terminal domain 413 511 IPR001650 -
Ahy20g2135 1679 Gene3D Ribonuclease III domain 1044 1226 IPR036389 GO:0004525|GO:0006396
Ahy20g2135 1679 ProSitePatterns Ribonuclease III family signature. 1292 1300 IPR000999 GO:0004525|GO:0006396
Ahy20g2135 1679 Gene3D Dicer dimerisation domain 577 674 IPR038248 -
Ahy20g2135 1679 CDD RIBOc 1062 1226 IPR000999 GO:0004525|GO:0006396
Ahy20g2135 1679 SUPERFAMILY RNase III domain-like 1255 1421 IPR036389 GO:0004525|GO:0006396
Ahy20g2135 1679 SMART ultradead3 38 237 IPR014001 -
Ahy20g2135 1679 PANTHER ENDORIBONUCLEASE DICER HOMOLOG 3 25 1673 - -
Ahy20g2135 1679 SUPERFAMILY RNase III domain-like 1060 1231 IPR036389 GO:0004525|GO:0006396
Ahy20g2135 1679 Pfam Ribonuclease III domain 1080 1214 IPR000999 GO:0004525|GO:0006396
Ahy20g2135 1679 Pfam Ribonuclease III domain 1292 1400 IPR000999 GO:0004525|GO:0006396
Ahy20g2135 1679 Gene3D - 36 274 IPR027417 -
Ahy20g2135 1679 CDD SF2_C_dicer 390 522 - -
Ahy20g2135 1679 Pfam PAZ domain 902 1038 IPR003100 GO:0005515
Ahy20g2135 1679 Pfam Dicer dimerisation domain 582 668 - -
Ahy20g2135 1679 SMART riboneu5 1271 1424 IPR000999 GO:0004525|GO:0006396
Ahy20g2135 1679 SMART riboneu5 1062 1235 IPR000999 GO:0004525|GO:0006396
Ahy20g2135 1679 Pfam Type III restriction enzyme, res subunit 53 206 IPR006935 GO:0003677|GO:0005524|GO:0016787
Ahy20g2135 1679 CDD RIBOc 1272 1422 IPR000999 GO:0004525|GO:0006396
Ahy20g2135 1679 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 530 IPR027417 -
Ahy20g2135 1679 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 49 206 IPR014001 -
Ahy20g2135 1679 PANTHER DICER-RELATED 25 1673 - -
Ahy20g2135 1679 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 394 552 IPR001650 -
Ahy20g2135 1679 ProSiteProfiles Ribonuclease III family domain profile. 1256 1401 IPR000999 GO:0004525|GO:0006396
Ahy20g2135 1679 ProSiteProfiles Ribonuclease III family domain profile. 1043 1215 IPR000999 GO:0004525|GO:0006396
Ahy20g2135 1679 Gene3D - 388 547 IPR027417 -
Ahy20g2135 1679 ProSiteProfiles PAZ domain profile. 906 1018 IPR003100 GO:0005515
Ahy20g2135 1679 Gene3D Ribonuclease III domain 1252 1423 IPR036389 GO:0004525|GO:0006396
Ahy20g2135 1679 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1458 1493 IPR014720 -
Ahy20g2135 1679 CDD DEXHc_dicer 42 238 - -
Ahy20g2135 1679 SUPERFAMILY PAZ domain 903 1018 IPR036085 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2135 Ahy-Chr20 119191254 119202761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2135 438 511 Eukaryotic Initiation Factors Gene Family AT3G19760 37.838 4.12e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2135 K11592 - gmx:100806831 2336.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2135 20 119191254 119202761 Ahy20g2135 20 119191254 119202761 ECH
Ahy20g2135 20 119191254 119202761 Ahy10g1698 10 96992909 97004373 hybridization