Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2134 ATGATCCCCAGCAACACCACACGAAGAGCTCTGCAGCCATTGGAGCCAATGTCTTCTGTTTCGTCCTCCCCACATATTCGATCAAATGCTCCTTTTGCTGGTCTTGTTATATGCGTTACTGGGCTATCCAAAGAAGCACGGAATCAAGTCATGGAGGCAACAGAAAGATTAGGTGGCCAGTATAGCCCCAATTTGCATCCACAGTGTACCCATTTGGTGGTTCAGAGTTTTGGAGGACGCAAGTTTGAGCATGCGCTAAAGCATGGAGCAAAAAACGGTCTCTTTGTTGTCACACTGGGTTGGTTCGTGGACAGTGTCAGGAAAAATGTGAGGTTGAGTGAGTCCCATTACAGTGTGAAGAGTAATGTGGACAATAACACACGCTTGGATGACTTTAAACTGCTTCCTGGGTATACCGGTGCCGAAAATTCTTGTCTTCCAGCAAGTCTACGTGAGACCAAGAACGTTGATAATGTTGAAGAATTTCAAAGATCTTCTGGTAGAAAATCTAATAGAAGTGTGGACTTCACTTTATCTGGTTACTCCATCTATATTGATCCAGGAATTTCATGTGAATTGAGGAACAAGGTTGTTGATACTGCCACGAGAGAAGGTGCTAGTCTGACGGAACGATGGTTTGTTGGCTGCAATGTTAGTCATGTAGTGACTGAAGGGACATTCGTACAAAGATATCTTGGATATTCGAGTAACCTCATCACACCACTGTGGATTCTCAAAACAGCCAAGGAGAAATATGCACAAAGGCTTGTTCATATGTCTGCTGATTTGGCAAAGCAAGTTGGATTGATGCTTGAAGACATTCATAATGGCATTTTAAGGGAGGAAATAAAGAAGCAAAAAGACAATGAAGTTCATCAGGGCAGTGAAAGTGAATATAGTTACCACGAGAGGCAACAAATAGTGAATGCTGCAAAAATTGGTGTAAGAAGTCGCCGTGGTAGGCAAATGCAGACTTGTCAGACTCCAATTCGTCCTATAACTCCTAACAACCTTCTAGACTCTATCAGCTGGTCTATATCCGAGCCAACTTCAGCTGCTTCCATCTACACAGATTCTTTCAGTGTTGAAGATCATACTGAAAATCATAATACTTCAATATTTCTTGGTGCAAAAGGGGATGGCAAGGACTCAGAAGCTTCATTTTCAAACTCCACTCGTCATCTGACCGAAAGCGAGAAATCAGAGTTGATATTTAAAAGCCATTTTCTCACCATACTCTTCCCAATCGACCGATTTGCCGAGATGGGTCCTTCTTCACAAACTTTCTTCAGCCATAATGGTTTTACATGTCTTCAGGTGTTGGATCATATCCATGCATTTTATCAGGAGAATATGTCAAACCAAGAAATAGAAGCTGCAATTCATACCGATTCACGACATGCTGATAGGCTTAGATCAGTGTACCGCAGTAAAGAAACTGCAGAGCGTGGCTTTGTGTTGTTCAAACGCATTGAATTTTTGGGAAGTCGCACTAGTTTTGAAATGTTGAAGCGTGTAACTGGGGACAACAACTCCAATGTGTATGAGCTATTACTTAGGGCTTAA 1566 0.4221 MIPSNTTRRALQPLEPMSSVSSSPHIRSNAPFAGLVICVTGLSKEARNQVMEATERLGGQYSPNLHPQCTHLVVQSFGGRKFEHALKHGAKNGLFVVTLGWFVDSVRKNVRLSESHYSVKSNVDNNTRLDDFKLLPGYTGAENSCLPASLRETKNVDNVEEFQRSSGRKSNRSVDFTLSGYSIYIDPGISCELRNKVVDTATREGASLTERWFVGCNVSHVVTEGTFVQRYLGYSSNLITPLWILKTAKEKYAQRLVHMSADLAKQVGLMLEDIHNGILREEIKKQKDNEVHQGSESEYSYHERQQIVNAAKIGVRSRRGRQMQTCQTPIRPITPNNLLDSISWSISEPTSAASIYTDSFSVEDHTENHNTSIFLGAKGDGKDSEASFSNSTRHLTESEKSELIFKSHFLTILFPIDRFAEMGPSSQTFFSHNGFTCLQVLDHIHAFYQENMSNQEIEAAIHTDSRHADRLRSVYRSKETAERGFVLFKRIEFLGSRTSFEMLKRVTGDNNSNVYELLLRA* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2134 521 CDD BRCT_TopBP1_rpt2_like 31 109 - -
Ahy20g2134 521 SUPERFAMILY BRCT domain 27 120 IPR036420 -
Ahy20g2134 521 MobiDBLite consensus disorder prediction 1 25 - -
Ahy20g2134 521 Pfam twin BRCT domain 35 101 IPR001357 -
Ahy20g2134 521 Gene3D BRCT domain 30 121 IPR036420 -
Ahy20g2134 521 Pfam Family of unknown function (DUF6699) 430 505 IPR046522 -
Ahy20g2134 521 ProSiteProfiles BRCT domain profile. 27 119 IPR001357 -
Ahy20g2134 521 SMART BRCT_7 29 109 IPR001357 -
Ahy20g2134 521 SMART BRCT_7 175 251 IPR001357 -
Ahy20g2134 521 PANTHER BRCT DOMAIN DNA REPAIR PROTEIN-RELATED 18 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2134 Ahy-Chr20 119186047 119191259 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2134 31 123 Core DNA Replication Machinery Family AT1G77320 36.559 4.13e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2134 - - gmx:100815253 834.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2134 20 119186047 119191259 Ahy20g2134 20 119186047 119191259 ECH
Ahy20g2134 20 119186047 119191259 Ahy10g1697 10 96987711 96993090 hybridization