Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2130 ATGAAGAATTCGAAGCAGCTTGCTAACATGTCTGGGGATGAAGGTGGTGATGCTGCTGATGCACCTAATAATAATAATAATCATAATCACACTTCATCTAATAATTGTGATGATGATAGCAACAATAACAAGAAGGTGTACAAAGGGGTGAGGAAGAGAAAGTGGGGGAAATGGGTATCTGAAATTAGGCTTCCAAATAGCCGCGAACGCATTTGGCTTGGCTCTTATGATTCTCCTGAAAAAGCTGCGCGTGCATTCGATGCTGCTCTTTATTGTCTCCGAGGTTGTCGAGCCAATTTCAATTTCCCCGACACTCCTTTCAACTTGAGCACCAGCGCCGCCGTTCATCATCATTCGCTTACTCATCAAGAAATTCAAGAGATTGCTGCTAGCTTTGCCCATTCTCAGGACCCACATCATGATCACCAACAAGAACAACCAAATAGCAATAACAATGATTCTTCATCAGTTGGATTGTTAGAATCCAAAGCTGATGCTGCTGTTGTATCTCAAGAGGAAGTGGACAACAACATGATGATGGATTGGACATTTTTGAAGGATTTGGGTGGTTCTTGTTCTGCTGATTGTGGGGGTGCTCTCTATTCTGATGAGTTGGACAGAATTGATCATCACTACTCGGGTGATGAATTGTTGTTCTCGGTACCAACTTTTCAGGATAATGTGGCTGATGATGACCCTTTTTTTAACCAATCATTCCTTTGGAATTGGAGCTTTTAA 738 0.4201 MKNSKQLANMSGDEGGDAADAPNNNNNHNHTSSNNCDDDSNNNKKVYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDAALYCLRGCRANFNFPDTPFNLSTSAAVHHHSLTHQEIQEIAASFAHSQDPHHDHQQEQPNSNNNDSSSVGLLESKADAAVVSQEEVDNNMMMDWTFLKDLGGSCSADCGGALYSDELDRIDHHYSGDELLFSVPTFQDNVADDDPFFNQSFLWNWSF* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2130 245 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700|GO:0006355
Ahy20g2130 245 MobiDBLite consensus disorder prediction 133 157 - -
Ahy20g2130 245 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 31 245 - -
Ahy20g2130 245 MobiDBLite consensus disorder prediction 1 48 - -
Ahy20g2130 245 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Ahy20g2130 245 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700|GO:0006355
Ahy20g2130 245 SMART rav1_2 46 109 IPR001471 GO:0003700|GO:0006355
Ahy20g2130 245 Gene3D AP2/ERF domain 46 104 IPR036955 GO:0003700|GO:0006355
Ahy20g2130 245 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF018 31 245 - -
Ahy20g2130 245 CDD AP2 47 105 IPR001471 GO:0003700|GO:0006355
Ahy20g2130 245 MobiDBLite consensus disorder prediction 20 40 - -
Ahy20g2130 245 SUPERFAMILY DNA-binding domain 46 104 IPR016177 GO:0003677
Ahy20g2130 245 Pfam AP2 domain 46 95 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2130 Ahy-Chr20 119072557 119073443 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2130 40 243 AP2-EREBP Transcription Factor Family AT1G19210 43.961 1.38e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy20g2130 AP2 2.50E-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2130 - - aip:107622034 476.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2130 20 119072557 119073443 Ahy20g2130 20 119072557 119073443 ECH
Ahy16g3264 16 149315492 149316533 Ahy20g2130 20 119072557 119073443 ECH
Ahy20g2130 20 119072557 119073443 Ahy10g1692 10 96889214 96889915 hybridization