Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2118 ATGATGAAAGGGATGAAGCATATTATTATTGTGATTGTTATTATGGGTTTGATGTTGTTGTGGCCTTGTCCATCATCAGCAGAGAAGACAGTGATTAATGTTGGAGTAGTGCTTGATCTTAGTGAAACAGTGGGGAAGATTGGATTGAGTTGCATCAACATGTCCCTTTCGGATTTCTATGATTCTCATCCTCATTACAACACCAGGATGCTCCTCCATGTCAGAGACTCTCAAACTGATGTTGTTACCGCTGCTTCTGCAGCTGTAGAGTTGATGAAAAAGGAGAAAGTGGAAGCAATAATGGGACCAGTAACATCAATGCAAGCAAGCTTTGTTGTGAATCTTGGAGACAAAGCTCACGTTCCAATCATATCCTTCACCGCAACAAGCCCTTCTCTAACATCGCTTGGCAGTTCCTACTTCTTTCGAATTGCACAAAATGATTCTACTCAAGTACACGCCATAAGCGACATCATCCAATCCTTCGGGTGGAGACAAGCAGTTCCTATCTACATCGACAACGACTATGGCCGCGCCATTATTCCCTTCTTAACCAATTCCCTTCAACAAGCAAATATCAGGGTCCCATACCTCGCTGTTATTCCTCCCTCCGCCACCACCGATCACATTGAAGAACAGCTTTACATGCTTATGACCATGGAAACTAGGGTTTTTGTTGTTCATATGGTGGGGAATCCTGGGTCCACTCTCTTTGCCATTGCGGATCGGATTGGAATGATGAAACAAGGCTATGTTTGGATTGTAACCAATGGTATGGCTAATACTTTGGCCTCTCTTGACTTCTCGGATATTCAAGCGATGCAAGGTGTGTTAGGAGTGAAAACATATGTTCCTAAAACCAAAAGGGTTGTTGATTTCCAAGCACGTTGGAAGAGGCGTTTCTTGCAGGACAATCCAGCCATGGTTGATGCAAGCATCAATGTGTTTGGATTATGGGCTTATGATGCCTCAACCGCGCTCGCAAGCGCCGTTGAGAGGGCTAATAATAATAATTCGAAACCCGGATTTCAAAACACCACAAATAATGCTTCCAGCAATTTCAGTGAGATTGACAATGTAGGAGTATCGGAGAGGGGTGAAGAATTGCGGGACGCTTTATCGGACACCAGATTCAGCGGCCTGGCCGGCCAATTCGGCCTTGTCAATGGAGAATTAGAAGCTGCAACTTTTCAGATAATTAACGTAAATGGTAATGGAGAAAAGGTGATAGGATTTTGGACACCACAGAAGAGATTAACAAGGAATCTTAGCAGCCTAATAAAAAGTAGTACAACTGATTTGAATAATAATCATGATAATGTTCTAGGAGCAATGATATGGCCAGGGGATAGTTATTCAGTTCCAAAGGGGTGGGAGATACCAACAAATGGGAAGAAATTGAGGATTGGAGTTCCGGTGTCATCAAGGCCTCAATTTGTGAAGGTGGAAAATGATGGTGAAACTAACACAACAAAGGTAACTGGTTTTAGCATTGATGTGTTTGAAGCGGTGGTGCAAGCTTTGCCTTATGCTTTGCCATACCAATTCATTCCTTTTGCAAAACCCAATGGGGAGAGCGCCGGCACCTATGATGATTTAATCATGCAGGTCTATTATGGGGTGTTTGATGCTGTGGTGGCAGACACAACGATTATAGCAAACAGGTCAAAGTACGTTGACTTCACGTTGCCGTATACAGAGTCAGGAGTATCAATGGTGGTGCCAGTGAAAGACAAGAGCAAGAAGGGTGCATGGGTGTTCCTAAAGCCTCTAACCTGGGATCTATGGATGACCACTGGTTGTTCCTTCGTGTTCTTTGGATTCGTGGTGTGGGTTCTTGAGCATCGCATCAACAAAGATTTTCGTGGCCCTCCTTCTCACCAGATCGGCACCAGTTTGTGGTTTTCTTTTTCCACCATGGTCTTTGCTCATCGAGAAAAAGTAGTGAGCAACACTGCACGGTTTGTTGTGATAATATGGGTATTTGTGGTGCTGATTTTGACTCAGAGTTACACAGCAAATTTATCATCACTACTAACAGTGGAGCAACTTCGACCAACAGTGACCAATGTAAATGATCTAATAAAGTATAGAACACGTGTTGGGTACCATACAGGTTCTTTTGTTCGTGGGATCTTGCTCAACCTTGGTTTCAAGGATTTTCAGCTCATAACTTATAATTCCACAGCACAATGTGATGATCTTCTCAGCAGAGGCAGTCAAAACGGTGGAATTGCTGCTGCATTTGATGAAATTCCTTACATTAGGATTCTTCTTGGAACCTATTGCTCTAAGTATACCATGGTGGACCCCACATTTAAAACCGATGGCTTTGGCTTTGTATTCCCAAAAAGTTCTCCTCTGGTGGGTGATGTATCAAGGGCAATTCTGAAAGTAACTGAAGATCCAAGAATGAAAGAAATAGAGAGTGCATGGTTTGAGAAGCGAAGTAGTTGCCAGCAAGAAGATGCATCAGTGTCTTCTTCTAATAGTCTTGGCCTAGACAGCTTCTGGGGCCTATTTCTCATTGCTGCATTGGCTTCCATTTCAGCACTCCTCATCTTTGCAGTTACATTCTTGTATGATCATAGACATCAATGGTGGTTCATCAATAATGATTATTCAACATGGAAGACTCGAATCCGCATCTTGCTGAGAATCTTCGACCAGAGAGACCCTAGGTCTCAAAGATTCAGGAGCGGTGGTACTGATTCAGTTAAGGAAGAAGATAGACACAATTATGATCAAAATAGCAGCACCATTGGTCGTCATCATCATCATCTTCATGATCATAGCTTAGATGCTGCTTCCACCTACACAGAATCCAGCTTCTCCTTTCAAGGATCACCTTGTGAAGACAGCAATAGTGATCATAATAATAATGTAGAGCAAAATAATTTGCGTAGTCAACCATCTCAACAAGAAAACTGA 2931 0.4275 MMKGMKHIIIVIVIMGLMLLWPCPSSAEKTVINVGVVLDLSETVGKIGLSCINMSLSDFYDSHPHYNTRMLLHVRDSQTDVVTAASAAVELMKKEKVEAIMGPVTSMQASFVVNLGDKAHVPIISFTATSPSLTSLGSSYFFRIAQNDSTQVHAISDIIQSFGWRQAVPIYIDNDYGRAIIPFLTNSLQQANIRVPYLAVIPPSATTDHIEEQLYMLMTMETRVFVVHMVGNPGSTLFAIADRIGMMKQGYVWIVTNGMANTLASLDFSDIQAMQGVLGVKTYVPKTKRVVDFQARWKRRFLQDNPAMVDASINVFGLWAYDASTALASAVERANNNNSKPGFQNTTNNASSNFSEIDNVGVSERGEELRDALSDTRFSGLAGQFGLVNGELEAATFQIINVNGNGEKVIGFWTPQKRLTRNLSSLIKSSTTDLNNNHDNVLGAMIWPGDSYSVPKGWEIPTNGKKLRIGVPVSSRPQFVKVENDGETNTTKVTGFSIDVFEAVVQALPYALPYQFIPFAKPNGESAGTYDDLIMQVYYGVFDAVVADTTIIANRSKYVDFTLPYTESGVSMVVPVKDKSKKGAWVFLKPLTWDLWMTTGCSFVFFGFVVWVLEHRINKDFRGPPSHQIGTSLWFSFSTMVFAHREKVVSNTARFVVIIWVFVVLILTQSYTANLSSLLTVEQLRPTVTNVNDLIKYRTRVGYHTGSFVRGILLNLGFKDFQLITYNSTAQCDDLLSRGSQNGGIAAAFDEIPYIRILLGTYCSKYTMVDPTFKTDGFGFVFPKSSPLVGDVSRAILKVTEDPRMKEIESAWFEKRSSCQQEDASVSSSNSLGLDSFWGLFLIAALASISALLIFAVTFLYDHRHQWWFINNDYSTWKTRIRILLRIFDQRDPRSQRFRSGGTDSVKEEDRHNYDQNSSTIGRHHHHLHDHSLDAASTYTESSFSFQGSPCEDSNSDHNNNVEQNNLRSQPSQQEN* 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2118 976 Gene3D - 149 314 - -
Ahy20g2118 976 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 912 - -
Ahy20g2118 976 PANTHER GLUTAMATE RECEPTOR 2.9 32 912 - -
Ahy20g2118 976 MobiDBLite consensus disorder prediction 944 976 - -
Ahy20g2118 976 Pfam Bacterial extracellular solute-binding proteins, family 3 489 814 IPR001638 -
Ahy20g2118 976 SMART GluR_14 468 815 IPR001320 GO:0015276|GO:0016020
Ahy20g2118 976 CDD GluR_Plant 465 813 - -
Ahy20g2118 976 PIRSF IGluLR_plant 2 955 IPR017103 -
Ahy20g2118 976 Gene3D - 764 821 - -
Ahy20g2118 976 Pfam Ligand-gated ion channel 815 847 IPR001320 GO:0015276|GO:0016020
Ahy20g2118 976 Gene3D - 346 467 - -
Ahy20g2118 976 Gene3D - 468 583 - -
Ahy20g2118 976 SUPERFAMILY Periplasmic binding protein-like II 442 814 - -
Ahy20g2118 976 MobiDBLite consensus disorder prediction 895 927 - -
Ahy20g2118 976 SUPERFAMILY Periplasmic binding protein-like I 27 459 IPR028082 -
Ahy20g2118 976 CDD PBP1_GABAb_receptor_plant 33 423 IPR044440 -
Ahy20g2118 976 Pfam Receptor family ligand binding region 51 405 IPR001828 -
Ahy20g2118 976 Gene3D - 584 712 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2118 Ahy-Chr20 118603206 118609812 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2118 11 956 Ion Channels AT2G29120 48.164 0.0 887
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2118 K05387 - pop:18107523 1052.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2118 20 118603206 118609812 Ahy20g2118 20 118603206 118609812 ECH