Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2101 ATGGAGCTGATTGAGAAGGAAAAAGCTCGGAAGGCAACATTCCTAAAGAGAAAGAATGGATTAATAAAGAAAGTGTACGAATTCTCGACACTTTGTGGTGTTGATGTTTGTGTAATCATCTATGGCCCCAGCTTTGATGGCGGAAAATCCACCGAAGCTGAAACATGGCCCCAAGATCCTAAGGAGGTACAGCGAATCATTCAAAAGTACCATAACACAACGATTGATAGACGTCCTAGGATCTATGATGTTCAAGAGTATTATAGAGATAGGGTTAAGAAGATTGAAGGTGAGATTTCTAAGGTGCACAAGGAGAAGCTTAAGATCATGTATCCTACTTGGGATGACTCATTCAATGATCTTAGGGAGGACCAATTGAGAATGTTTCTTAGCATTTTGGATTCTAAGATTCTTGCTTGCAATCAAAGAATCAACATGCTAAAGCAAGATCCTAAGGGAAAAACAATGGTACAATCAAAACCCAGTTTTGAGGATGTTAGCCACTTTAATTTCATGCCAAACATGTCTCAAGCACAGTTTCTTCCTCATCTTCCCATGACACCCATTATTGATGATACCCCCCAATTACCATTCTACCCTTTGCAAGTAGGGCAAAGTTCATCACAATCTTCCCCTCTTCTTTTTGACCAAAATAGTGGGACTGTGGATTGGGAGCAACAAGTTGGTGCTTGTAGCACTCATGACAAAGGGAATATACAATCAATGCAGCCATATAGTTTTGCTCTATCACAATATCAAGATATGCCTCACGAGTTTCAAGTTATTAATGGACTCTATGATGCAAATATGCTTCATCATCAAGTTCAAATGTTCAACTACATGCATGAAAGGAAGTAG 858 0.3928 MELIEKEKARKATFLKRKNGLIKKVYEFSTLCGVDVCVIIYGPSFDGGKSTEAETWPQDPKEVQRIIQKYHNTTIDRRPRIYDVQEYYRDRVKKIEGEISKVHKEKLKIMYPTWDDSFNDLREDQLRMFLSILDSKILACNQRINMLKQDPKGKTMVQSKPSFEDVSHFNFMPNMSQAQFLPHLPMTPIIDDTPQLPFYPLQVGQSSSQSSPLLFDQNSGTVDWEQQVGACSTHDKGNIQSMQPYSFALSQYQDMPHEFQVINGLYDANMLHHQVQMFNYMHERK* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2101 285 Gene3D - 6 93 IPR036879 GO:0003677|GO:0046983
Ahy20g2101 285 ProSiteProfiles MADS-box domain profile. 1 44 IPR002100 GO:0003677|GO:0046983
Ahy20g2101 285 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL82 1 192 - -
Ahy20g2101 285 SUPERFAMILY SRF-like 1 91 IPR036879 GO:0003677|GO:0046983
Ahy20g2101 285 CDD MADS_SRF_like 1 71 IPR033897 GO:0000981|GO:0000987|GO:0045944
Ahy20g2101 285 PANTHER MADS BOX PROTEIN 1 192 - -
Ahy20g2101 285 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 4 44 IPR002100 GO:0003677|GO:0046983
Ahy20g2101 285 SMART madsneu2 1 56 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2101 Ahy-Chr20 118100077 118100939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2101 1 271 Type I MADS-box Gene Family AT5G55690 29.617 1.38e-25 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Ahy20g2101 SRF-TF 6.60E-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2101 - - adu:107470541 530.406