Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2079 ATGGAAACAACATGCGTGGATACGTCTCTCACCCTCAACCTTGTTTCCCTTCACAAAACGGATGTTGCGCCGGAGGTTTTGGTTGAAGAATTGCATCGGCTAAGCTGTGAGAACAAGAAGCTAACGGAGACATTGAAGCAAGTATGTGAGAACTATATTGCCTTGAAAACCAAGCTCAGCCAACTGAGCAGCAATAACATGGTGAGTTCCGAGAAAGAAGCCGCGGTGTCAAGGACGCCAACACGGAAGAGAAAGGCGGAGAGTGAGAGCTGCATGAGTACCTATAGTGATAAGTGCAACACCCCAACTAGTACGGATGAAGAAACACTCAAAAGAGCTAAGCATGAAGGTTCGCCAAAGGTTTCCAAGATTGTTGTACGAACTGAAGCATCTGATACTACCAGCTTATATGTGAGGGATGGATATCAATGGAGAAAATATGGGCAGAAAGTGACCAGAGATAACCCCTCTCCTAGGGCTTACTTCAGGTGCTCCAATGCCCCAAACTGCCCCGTCAAGAAGAAGGTGCAAAGGAGTGCAGAAGATCGAAGAATGTTGGTGGCAACATACGAAGGAGAGCACAACCATGTGCAACCGCAAGATTCTTATTATTCATCAAGCCTACAAAGTGATGATCATTATCAAAGCCCTACTAGAGTTGACTTGGTCAATAAGTCAGAATTATTAGAATCGGTTGGCAATAACAATGATGGAGGAAAGTCTTCTTGTGTGCGGCTGCAGCCCCAGCTGTTAGCTCAACAAATGGCCACTTCTTTGACTAAGGATCCCAATTTCACCGCCGCACTTGCAACCGCCATTACAGGAAGAATTCTATCTTCACACTTCTCCTAA 852 0.4566 METTCVDTSLTLNLVSLHKTDVAPEVLVEELHRLSCENKKLTETLKQVCENYIALKTKLSQLSSNNMVSSEKEAAVSRTPTRKRKAESESCMSTYSDKCNTPTSTDEETLKRAKHEGSPKVSKIVVRTEASDTTSLYVRDGYQWRKYGQKVTRDNPSPRAYFRCSNAPNCPVKKKVQRSAEDRRMLVATYEGEHNHVQPQDSYYSSSLQSDDHYQSPTRVDLVNKSELLESVGNNNDGGKSSCVRLQPQLLAQQMATSLTKDPNFTAALATAITGRILSSHFS* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2079 283 ProSiteProfiles WRKY domain profile. 133 199 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ahy20g2079 283 MobiDBLite consensus disorder prediction 195 216 - -
Ahy20g2079 283 Coils Coil 31 51 - -
Ahy20g2079 283 MobiDBLite consensus disorder prediction 76 91 - -
Ahy20g2079 283 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 281 - -
Ahy20g2079 283 SUPERFAMILY WRKY DNA-binding domain 135 199 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ahy20g2079 283 Pfam WRKY DNA -binding domain 140 196 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ahy20g2079 283 Gene3D WRKY domain 120 200 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ahy20g2079 283 MobiDBLite consensus disorder prediction 64 115 - -
Ahy20g2079 283 MobiDBLite consensus disorder prediction 191 216 - -
Ahy20g2079 283 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 281 IPR044810 GO:0003700
Ahy20g2079 283 SMART WRKY_cls 138 198 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2079 Ahy-Chr20 117517205 117519430 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2079 3 277 WRKY Transcription Factor Family AT1G80840 43.051 3.87e-64 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ahy20g2079 WRKY 5.30E-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2079 - - gmx:100127373 277.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2079 20 117517205 117519430 Ahy20g2079 20 117517205 117519430 ECH
Ahy20g2079 20 117517205 117519430 Ahy10g1635 10 94917202 94919745 hybridization
Ahy16g3202 16 148542622 148545425 Ahy20g2079 20 117517205 117519430 PCT
Ahy6g2502 6 110000028 110002988 Ahy20g2079 20 117517205 117519430 PCT
Ahy20g2079 20 117517205 117519430 Ahy16g3202 16 148542622 148545425 PCT
Ahy20g2079 20 117517205 117519430 Ahy6g2502 6 110000028 110002988 PCT