Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2063 ATGGATACACAACAACAACCTCAACCTCATCATCGGTGTGATAAAATTGCAAGCAACAAACCATGGCAGAGTTCACAAGAAGGTCAAAAGGAGCATCAGCAAGAGCAAGTAGATACTACTTTGTTGGATCTGAATCTGAATGTCCATGATGATGATGAGTGCAGCACAGAGTTGAGCCTCATCACGTGTTTGGACATGGATAATTCCTCAAAAACTACTTCAATTGAAGAGAACAATAACAACAACAACAACAACAACACGTGTTGTGCAGGTTCTGATCAAAGAGTGTTCTCTTGCAACTACTGCCAGAGGAAATTCTACAGTTCACAAGCTCTTGGAGGACACCAAAATGCTCACAAGAGAGAGAGATCAATTGCAAAGAGAGGTCAGAATAGGTTATTAGGATCCTCACCATTTATGATCCCTTTTCTTCAACATCATCATAGATATGCTAGTATTGCATCTTTACCTCTCTACGGTGCTTGTGCAAACAAACCACTTGGAATTCAAGCTCACTCCTTGATTCACAAACCTTCTTTTGTTCATCATCATATATCAAATGGGTTTGGAAGACCACCTCCCCTCATTGGAAGTAGTAGTGTTGGTAGATTCCAGGTGGCCAAGAACATGCTCAATTCTGCAGCAGATAATGAAGAAATCACAGCTTATCTTGTTACTAGGACTACTCATCATTTGAAGACTAATCAAGAAGACAATATAATGATCAAGAATAATAAGCATCTTGATTTATCTCTTAAGCTCTAG 765 0.3935 MDTQQQPQPHHRCDKIASNKPWQSSQEGQKEHQQEQVDTTLLDLNLNVHDDDECSTELSLITCLDMDNSSKTTSIEENNNNNNNNNTCCAGSDQRVFSCNYCQRKFYSSQALGGHQNAHKRERSIAKRGQNRLLGSSPFMIPFLQHHHRYASIASLPLYGACANKPLGIQAHSLIHKPSFVHHHISNGFGRPPPLIGSSSVGRFQVAKNMLNSAADNEEITAYLVTRTTHHLKTNQEDNIMIKNNKHLDLSLKL* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2063 254 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 17 188 - -
Ahy20g2063 254 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 17 188 IPR044246 GO:0009788
Ahy20g2063 254 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Ahy20g2063 254 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 124 IPR013087 -
Ahy20g2063 254 MobiDBLite consensus disorder prediction 1 37 - -
Ahy20g2063 254 SUPERFAMILY beta-beta-alpha zinc fingers 93 124 IPR036236 -
Ahy20g2063 254 Gene3D Classic Zinc Finger 69 137 - -
Ahy20g2063 254 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 198 254 - -
Ahy20g2063 254 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 198 254 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2063 Ahy-Chr20 116399453 116400640 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2063 92 254 C2H2 Transcription Factor Family AT1G80730 47.727 4.94e-36 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy20g2063 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2063 - - aip:107621568 504.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2063 20 116399453 116400640 Ahy20g2063 20 116399453 116400640 ECH
Ahy20g2063 20 116399453 116400640 Ahy10g1620 10 93606529 93607705 hybridization
Ahy16g3177 16 148121718 148123078 Ahy20g2063 20 116399453 116400640 PCT
Ahy6g2482 6 109652296 109653535 Ahy20g2063 20 116399453 116400640 PCT
Ahy20g2063 20 116399453 116400640 Ahy16g3177 16 148121718 148123078 PCT
Ahy20g2063 20 116399453 116400640 Ahy6g2482 6 109652296 109653535 PCT