Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2059 ATGGCCAGAGCACAACAAAGATACCGAGGAGTCCGACAAAGGCATTGGGGTTCTTGGGTCTCTGAAATTCGCCACCCTATTTTGAAAACAAGGATATGGCTTGGAACGTTTGAGACAGCAGAAGATGCAGCAAGAGCGTACGATGAAGCAGCAAGGTTGATGTGTGGAACGAGAGCCAGAACCAACTTCCCTTACAACCCTGATTCCTCTCACTCCACGCCATCCAAGCTTCTCTCTGCTACTTTAACCGCTAAGCTTCACAGGTGTTACATGGCCTCTCTTCAAATCACTAGACCTTCTCCCATCAACAATGGCGCCTTTTCCACTGCACCAACACCCACCATCCAACAGAAGAGACCACACAAGGATGAACAACAACAACAGCAACAGCAACAAGAACAACAATCTTCATCTTCATTGGAAGATGGCAACTGGGCTTCCATGAAGAAGGTTAAAGTGGAAAATCATGAGTTTATTAAGCCTCTTGAGGAAGATCACAATCACATTGAGCAAATGATTCAGGAGTTGCTTCATTATGGCTCCATTGAGCTCTGTTCTCTTTAA 564 0.4557 MARAQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGTRARTNFPYNPDSSHSTPSKLLSATLTAKLHRCYMASLQITRPSPINNGAFSTAPTPTIQQKRPHKDEQQQQQQQQEQQSSSSLEDGNWASMKKVKVENHEFIKPLEEDHNHIEQMIQELLHYGSIELCSL* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2059 187 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Ahy20g2059 187 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Ahy20g2059 187 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Ahy20g2059 187 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 185 - -
Ahy20g2059 187 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Ahy20g2059 187 MobiDBLite consensus disorder prediction 101 144 - -
Ahy20g2059 187 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003 1 185 - -
Ahy20g2059 187 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Ahy20g2059 187 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Ahy20g2059 187 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Ahy20g2059 187 MobiDBLite consensus disorder prediction 127 144 - -
Ahy20g2059 187 MobiDBLite consensus disorder prediction 101 116 - -
Ahy20g2059 187 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2059 Ahy-Chr20 116176080 116177327 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2059 1 187 AP2-EREBP Transcription Factor Family AT5G25190 60.209 1.96e-70 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy20g2059 AP2 6.00E-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2059 - - adu:107470449 328.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2059 20 116176080 116177327 Ahy20g2059 20 116176080 116177327 ECH
Ahy20g2059 20 116176080 116177327 Ahy10g1613 10 93305518 93306723 hybridization
Ahy16g3173 16 148054843 148056130 Ahy20g2059 20 116176080 116177327 PCT
Ahy6g2475 6 109565184 109566316 Ahy20g2059 20 116176080 116177327 PCT
Ahy20g2059 20 116176080 116177327 Ahy16g3173 16 148054843 148056130 PCT
Ahy20g2059 20 116176080 116177327 Ahy6g2475 6 109565184 109566316 PCT