Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2045 ATGGCATACCATAACCACCACCTCTCTCAAGACCTTTCACCACTTCACCACCAACATTTCAGTGACCAACAGCAACCTCAACCGCTCTCAGATAACACTGCTATACTTTCCGACCACCTCTCCCCCACTGACCCCACCGCCAAATCCCCCTCCGATCCTCACCCCAACTGGCTCAACAACGCCCTTCTCCGCACCCACTACACCAACAACGATACCAACGCCACCAATTTTCTCAACCTCCACACCGCCGCCTCTGCTTCTGACTCCTCCGCCGCCGCCGCCGCAGCTGCTTCACAATCCTCCGCTCAGTGGCTCGCCCGCCCTGTCCTCCACCGCAACCACAGCGAGGTCATCGACGACGTCGCCCCCCTGTCCAACAACGAATCGCCTGATATGAAGGTTGCCGGCGACGGCAAGGGGGAGGTGGTGACTGTGGAGAGCGGCGGCGAGGGCGGAGGTGGGTTGGTGAACTGGCAGAATGCTCGGTACAAGGCGGAGATTCTGTCACACCCGCTTTACGAGCAGCTTCTGTCGGCACACGTGGCGTGCCTGCGGATCGCCACGCCGGTGGACCAGTTACCGAGGATCGACGCTCAGTTGGCTCAGTCCCAGAATGTGGTGGCCAAGTACTCTTCCTTCGCTCACGCTCCTCTCGGCGATGACAAAGAGCTCGACCAGTTCTTGTCACACTATGTTTTGTTGCTCTGTTCCTTCAAAGAACAACTCCAACAACATGTTCGTGTCCATGCAATGGAAGCAGTAATGGCTTGCTGGGAGATTGAGCAATCCTTACAAAGTCTAACAGGAGTTTCGCCAGGGGAAGGTACCGGAGCAACAATGTCCGATGATGAAGATGACCAAGTAGACAGTGATGCCAATCTGTTTGATGGTGGTTTGGATGGTTCTGATAGCATGGGATTTGGCCCTCTTGTTCCAACAGAGAATGAGAGATCCCTTATGGAACGTGTAAGACATGAATTGAAGCATGAACTGAAACAGGGTTATAAGGATAAAATTGTGGACATAAGAGAGGAAATTTTGCGCAAAAGACGAGCCGGAAAACTTCCCGGTGACACCACCTCTGTTCTTAAAGCATGGTGGCAATCACATTCCAAGTGGCCTTACCCTACAGAGGAAGATAAGGCAAGGTTGGTGCAGGAAACAGGATTGCAATTGAAGCAGATCAATAATTGGTTCATCAACCAAAGGAAGAGGAACTGGCACAGTAATCCTTCAACTTCTACTTCCTTGAAGAGCAAGCGCAAAAGGTGA 1272 0.5267 MAYHNHHLSQDLSPLHHQHFSDQQQPQPLSDNTAILSDHLSPTDPTAKSPSDPHPNWLNNALLRTHYTNNDTNATNFLNLHTAASASDSSAAAAAAASQSSAQWLARPVLHRNHSEVIDDVAPLSNNESPDMKVAGDGKGEVVTVESGGEGGGGLVNWQNARYKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSSFAHAPLGDDKELDQFLSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDDQVDSDANLFDGGLDGSDSMGFGPLVPTENERSLMERVRHELKHELKQGYKDKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTSLKSKRKR* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2045 423 SUPERFAMILY Homeodomain-like 348 412 IPR009057 -
Ahy20g2045 423 Gene3D - 347 408 - -
Ahy20g2045 423 SMART ELK_2 326 347 IPR005539 GO:0003677
Ahy20g2045 423 SMART KNOX2_2 214 269 IPR005541 GO:0003677|GO:0005634
Ahy20g2045 423 CDD homeodomain 349 410 IPR001356 GO:0003677
Ahy20g2045 423 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 47 423 - -
Ahy20g2045 423 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 47 423 - -
Ahy20g2045 423 ProSiteProfiles 'Homeobox' domain profile. 346 409 IPR001356 GO:0003677
Ahy20g2045 423 MobiDBLite consensus disorder prediction 17 57 - -
Ahy20g2045 423 ProSiteProfiles ELK domain profile. 326 346 IPR005539 GO:0003677
Ahy20g2045 423 Pfam ELK domain 326 347 IPR005539 GO:0003677
Ahy20g2045 423 Pfam Homeobox KN domain 366 405 IPR008422 GO:0003677|GO:0006355
Ahy20g2045 423 MobiDBLite consensus disorder prediction 403 423 - -
Ahy20g2045 423 Pfam KNOX1 domain 163 204 IPR005540 GO:0003677|GO:0005634
Ahy20g2045 423 Pfam KNOX2 domain 218 268 IPR005541 GO:0003677|GO:0005634
Ahy20g2045 423 SMART KNOX1_2 161 205 IPR005540 GO:0003677|GO:0005634
Ahy20g2045 423 SMART HOX_1 348 413 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2045 Ahy-Chr20 115601638 115605483 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2045 1 423 Homeobox Transcription Factor Family AT5G25220 67.421 0.0 544
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Ahy20g2045 KNOX2 2.00E-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2045 - - gmx:100790048 597.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2045 20 115601638 115605483 Ahy20g2045 20 115601638 115605483 ECH
Ahy20g2045 20 115601638 115605483 Ahy10g1602 10 92747774 92751766 hybridization