Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2037 ATGGGGAGAGGAAAGATCGCGATAAGGAGGATCGACAATTCCACGAGCAGGCAAGTGACCTTCTCGAAGCGAAGGAACGGTTTCTTGAAGAAGGCGAAGGAGCTTGCAATTTTGTGCGATGCTGAGGTTGGAGTTATGATCTTTTCCAGCACTAACTCTATGATTTCTCCAGTACCAGGGTTCAATTATAGCTATTATTATGGTTGTCATTATACTGAGGCAGGACCTAGATTTTACTCGTTTGCAAGCTCATGTAAACTCTGCTGGCAGACTCGTACATGCATTGAACTTGTTATGTTAACAATTTCATTACAAATATAG 321 0.4206 MGRGKIAIRRIDNSTSRQVTFSKRRNGFLKKAKELAILCDAEVGVMIFSSTNSMISPVPGFNYSYYYGCHYTEAGPRFYSFASSCKLCWQTRTCIELVMLTISLQI* 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2037 106 CDD MADS_MEF2_like 2 52 IPR033896 GO:0000977|GO:0045944
Ahy20g2037 106 ProSiteProfiles MADS-box domain profile. 1 54 IPR002100 GO:0003677|GO:0046983
Ahy20g2037 106 SUPERFAMILY SRF-like 1 59 IPR036879 GO:0003677|GO:0046983
Ahy20g2037 106 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL16 1 52 - -
Ahy20g2037 106 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ahy20g2037 106 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ahy20g2037 106 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ahy20g2037 106 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ahy20g2037 106 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
Ahy20g2037 106 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 52 - -
Ahy20g2037 106 Gene3D - 13 65 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2037 Ahy-Chr20 115277640 115279061 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2037 1 54 MADS-box Gene Family AT2G14210 85.185 5.73e-27 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Ahy20g2037 SRF-TF 1.70E-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2037 K09264 - aip:107624303 219.164