Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2029 ATGTTATTTTTTCCAACTAAGATTGCACTTTTTATTCTTCTTTCTATTACTCTATCTCCACTGTCTTTTCTGTCAGGAAGAGAAGAACTCCAAAGCTTAAAGAAGAAACTTCCCACACTGCTATTCTCTTTTCTTCCCTTCCCCTGCATCCAATTTGGAATGTATGTAAATTTTCTTTCTTCCATGAACGAAGCCCGAATTGAAATCACGATTCCACACTTGTTTAGATGCCCAATAAGCTTAGACTTGTTGGAAGATCCAGTGACACTATGCACAGGCCAAACCTATGACAGATCAAGCATTGAAAAATGGCTTTCTGCTGGTAACCTCACTTGCACAGTCACAATGCAGAAGCTTCATGATCCTTCCATTGTTCCCAACCACACTCTCCGCCACTTGATCGACCAGTGGCTCCAACTTGGCTACCAATTCCACCCTGGAAACTCCGCAACAATCGATTACTTGACCAGCCTCAAACACGCTCTCGAGTCTCGTGACTCCTCCTTGGACCACAAGTTACAAGCACTCCACAAGATTCAGGTACTCTCCGACGAGTACTGCTCCTTCAAGCGCACATGCTTTAACCAACTGAGCTATTTGACGCTTCTATTACAACTTGTTTTCGAAACAAGGTCCATGGAATTCACAGAGCTGGCGCTTTCTTGCATCGTAAAGTTGCTTCCTCTCGTGAATTTGGATCCGCTGAACATGATCAAAGACGAGTCGAAGCTATCAACGTTTGTTTCGTTATTGGAAAAGGGAACAACCAAGACCAAAACAAGCTTGTGCCATCTCATAGATTCAACCGCAACATCAACACAAACGCAAGAGTTATGTCACGTTCTTGGAAATTCACGGAAGGTGATAGAAGAGATTGTGAGACTAGCTCGCGAAATCCAGGAGGAAGAGTCATCTAAAGCAGGAATCAAAGCCATGTCAGCATTATGCAGCTTGCAATCGAACAGAGAGAGTTTGGTGAGAGGAGGAGCAATTGATGGAGTGATAGCATACATGTTGGAATCTGACAAGTTGCAGAAGAATTTGGCTCCAATGGCAATGGGGATAATAGAGAAGCTTGTGGTGTTAGAGAGTGGGAAAGTGGGAGTGGTGAACCACCCAAGTGGTATTCAAACGGTGGTGAAGATGGTGTTCAGGGTTTGCAACAACCAAGAGTATTGCTGTAGTGAGGTTGCCGTTGGGGTGCTTTTGGTAATTTGTCGTGATTATGGGGTTGCAAGAGAGGAAGCCATTGGAGCTGGGATCTTGACTCAGTTGCTTTTCCTTCTTCAGAGTCAGTGTGGTAACAAAACCAAGACCAAGGCCAGGATGCTTCTCAAGTTGTTGAGATCCAAGTGGAATCAGGAATCAAACAACAAACTATGA 1383 0.4411 MLFFPTKIALFILLSITLSPLSFLSGREELQSLKKKLPTLLFSFLPFPCIQFGMYVNFLSSMNEARIEITIPHLFRCPISLDLLEDPVTLCTGQTYDRSSIEKWLSAGNLTCTVTMQKLHDPSIVPNHTLRHLIDQWLQLGYQFHPGNSATIDYLTSLKHALESRDSSLDHKLQALHKIQVLSDEYCSFKRTCFNQLSYLTLLLQLVFETRSMEFTELALSCIVKLLPLVNLDPLNMIKDESKLSTFVSLLEKGTTKTKTSLCHLIDSTATSTQTQELCHVLGNSRKVIEEIVRLAREIQEEESSKAGIKAMSALCSLQSNRESLVRGGAIDGVIAYMLESDKLQKNLAPMAMGIIEKLVVLESGKVGVVNHPSGIQTVVKMVFRVCNNQEYCCSEVAVGVLLVICRDYGVAREEAIGAGILTQLLFLLQSQCGNKTKTKARMLLKLLRSKWNQESNNKL* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2029 460 PANTHER WDSAM1 PROTEIN 70 451 IPR045185 GO:0061630
Ahy20g2029 460 ProSiteProfiles U-box domain profile. 70 144 IPR003613 GO:0004842|GO:0016567
Ahy20g2029 460 SMART Ubox_2 74 137 IPR003613 GO:0004842|GO:0016567
Ahy20g2029 460 Pfam U-box domain 71 139 IPR003613 GO:0004842|GO:0016567
Ahy20g2029 460 CDD RING-Ubox_PUB 75 117 IPR045210 -
Ahy20g2029 460 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 143 IPR013083 -
Ahy20g2029 460 PANTHER OS02G0542800 PROTEIN 70 451 - -
Ahy20g2029 460 Gene3D - 241 460 IPR011989 -
Ahy20g2029 460 SUPERFAMILY ARM repeat 155 448 IPR016024 -
Ahy20g2029 460 SUPERFAMILY RING/U-box 63 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2029 Ahy-Chr20 114806957 114808906 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2029 69 452 U-box Gene Family AT3G19380 32.918 2.41e-53 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2029 - - aip:107624179 882.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2029 20 114806957 114808906 Ahy20g2029 20 114806957 114808906 ECH