Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2013 ATGGCCGCAATGAAGTCAATTCCAGGGTACCGGTTTCATCCAACCGATGTTGAGCTGGTTCAGTACTTTCTGAAAAGGAAGGTGATGGGGAAGAGATTCCCTTGTGATGTGATTGCTGAACTTGATATATACAAATATCCGCCGTGGGATCTACCAGATCATTCTCTGCTTAAAACTGGAGATTTAGAATGGTACTTCTTTTGCCCTCGAGGGAAGAAGTATTCGAGCGGAGGGAGGATGAATAGGGCCACAGAATGTGGGTACTGGAAGACTACTGGCAAGGATAGATCCGTCGAGAACAAGAAGCTTGTTGTGGGCATGATAAAGACTCTGGTGTTTCACAATGGTAAAGCACCCAAGGGAGATCGAACTGATTGGGTTTTGCATGAATACCGACTTCAAGATAAGGACCTTGCTGATAAGGGTGTTCAACAGGATTCTTATGTGATATGTAAAGTGTTCCAAAAGGATGGTCCTGGTCCTAGGAATGGTGCACAATACGGAAGGCCATTTAATGAGGAAGACTGGGATAAAGAGGATGAAATTGACTGTGTAGAATCTGCACCTGTTGCTGCTCTACCTGCTGCAGTTCCTATACAACCCGCTTCATGTCATAGCTCTGTTGTGAATAACGTGAATCTCTCTGTGAGTGAATGCTATGGGTTGACCTCTGTTTCGTGTTTAACAGGGCCAATGCCTTCTTGCTCAGCACATCCTTCAGCTCCAAGTAATCAAGTTGATGGTGATATTACACCAGTGCCTGGTTCCGCCATAGAAGATAACATAATGGCTCCTACTGAGAACACCACAACTGAAAAGGTTGACAATCCTCCTGACATAAACAATGCTGAAGGAACACCTTGCTTTGATCCCAATGAGATTTTTGGGGGTCTGGGTGACCTTGATGGTTTGTTCGAAATGGGTGGAATTGGACATGGTTTTTCCTGCGGCCAAAATGGTGGATATACTGTGAATGAAATGCTTTCTGCGAGTGATGGGTTGCGTTTCCCTGATCCCCTGGACTACTTGGAGTTGGGTGACCTCGACACCCCATTGTTATGGGAGACTAATGAACAAGGAAATTGGAGCCAGGACAATAAATGA 1104 0.452 MAAMKSIPGYRFHPTDVELVQYFLKRKVMGKRFPCDVIAELDIYKYPPWDLPDHSLLKTGDLEWYFFCPRGKKYSSGGRMNRATECGYWKTTGKDRSVENKKLVVGMIKTLVFHNGKAPKGDRTDWVLHEYRLQDKDLADKGVQQDSYVICKVFQKDGPGPRNGAQYGRPFNEEDWDKEDEIDCVESAPVAALPAAVPIQPASCHSSVVNNVNLSVSECYGLTSVSCLTGPMPSCSAHPSAPSNQVDGDITPVPGSAIEDNIMAPTENTTTEKVDNPPDINNAEGTPCFDPNEIFGGLGDLDGLFEMGGIGHGFSCGQNGGYTVNEMLSASDGLRFPDPLDYLELGDLDTPLLWETNEQGNWSQDNK* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2013 367 PANTHER PLANT NAC DOMAIN PROTEIN 1 240 - -
Ahy20g2013 367 Pfam No apical meristem (NAM) protein 8 133 IPR003441 GO:0003677|GO:0006355
Ahy20g2013 367 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Ahy20g2013 367 Gene3D NAC domain 15 158 IPR036093 GO:0003677|GO:0006355
Ahy20g2013 367 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 240 - -
Ahy20g2013 367 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2013 Ahy-Chr20 114022081 114025101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2013 1 359 NAC Transcription Factor Family AT5G09330 42.162 1.46e-91 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ahy20g2013 NAM 3.70E-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2013 - - adu:107470479 743.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2013 20 114022081 114025101 Ahy20g2013 20 114022081 114025101 ECH
Ahy20g2013 20 114022081 114025101 Ahy10g1575 10 91687327 91690405 hybridization
Ahy13g3072 13 123467001 123472897 Ahy20g2013 20 114022081 114025101 PCT
Ahy3g2741 3 120647141 120650096 Ahy20g2013 20 114022081 114025101 PCT
Ahy20g2013 20 114022081 114025101 Ahy13g3072 13 123467001 123472897 PCT
Ahy20g2013 20 114022081 114025101 Ahy3g2741 3 120647141 120650096 PCT