Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1992 ATGGAAACAAACCACCGCAACACTATTTGCACATTCACAGATATTGATATCACTAATTGGAACAATAATGATCTTCCTCATCATGATTATGATGAAAATAAGAACATGGAAACAAGACAAGAAGAGGATCATAACAACCTCACTACTCTCAATGATAACCAAATTCCTCTTATGTCCTGGCCCAACCTTCAACAACAAAGACCAGCAATACCCTCACCGTCATCCTCAACTTCTAGAACCTTCTTTAGTGACATAATGGAGAACCAAGTGCAAGAAGAGGAAGAAGAAGAAGAAGAAGACGAAGAGCCTGAAGAAGAGTTAGGAGTCATGAAGGAGATGATGTACAGGATCGCCGCTATGCAGCCGGTGGACATCGACCCGGCTAGCGTTCGAAAGCCGAGGAGGCGAAACGTGCGAATAAGCGACGACCCTCAGAGCGTGGCAGCGCGTCACAGAAGGGAGAGGATCAGTGAGAGGATCCGAATCCTTCAGAGGTTAGTTCCAGGTGGCACCAAAATGGACACCGCTTCCATGCTCGACGAAGCCGTTCGATATGTTAAGTTCTTGAAACGCCAAATCAGGTTCCTCGAATCAAATCCAAATCAACTACCACCTAATTGGCCTTTTGCACCACTACTTAATATTAATAATATGCTTCACGCTCCTTCTGCTGCTGCCGCCACTTCCATGCCACCGCCACCGCCGCCGCCGGGGCTACCCGGATTTGGAACCCTAAGCAGCCATGGCCATCATGATTAG 759 0.473 METNHRNTICTFTDIDITNWNNNDLPHHDYDENKNMETRQEEDHNNLTTLNDNQIPLMSWPNLQQQRPAIPSPSSSTSRTFFSDIMENQVQEEEEEEEEDEEPEEELGVMKEMMYRIAAMQPVDIDPASVRKPRRRNVRISDDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAVRYVKFLKRQIRFLESNPNQLPPNWPFAPLLNINNMLHAPSAAAATSMPPPPPPPGLPGFGTLSSHGHHD* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1992 252 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 27 211 IPR045843 GO:0003700|GO:0006355
Ahy20g1992 252 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 145 205 IPR036638 GO:0046983
Ahy20g1992 252 SMART finulus 146 195 IPR011598 GO:0046983
Ahy20g1992 252 Gene3D - 143 208 IPR036638 GO:0046983
Ahy20g1992 252 Pfam Helix-loop-helix DNA-binding domain 150 189 IPR011598 GO:0046983
Ahy20g1992 252 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 140 189 IPR011598 GO:0046983
Ahy20g1992 252 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 27 211 - -
Ahy20g1992 252 Coils Coil 179 199 - -
Ahy20g1992 252 MobiDBLite consensus disorder prediction 224 252 - -
Ahy20g1992 252 MobiDBLite consensus disorder prediction 227 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1992 Ahy-Chr20 113094525 113095369 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1992 107 205 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G09750 85.859 1.33e-46 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ahy20g1992 HLH 1.00E-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1992 - - aip:107620984 434.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1992 20 113094525 113095369 Ahy20g1992 20 113094525 113095369 ECH
Ahy20g1992 20 113094525 113095369 Ahy10g1555 10 90864413 90865334 hybridization
Ahy13g3080 13 123691340 123692654 Ahy20g1992 20 113094525 113095369 PCT
Ahy3g2749 3 120862979 120863780 Ahy20g1992 20 113094525 113095369 PCT
Ahy20g1992 20 113094525 113095369 Ahy13g3080 13 123691340 123692654 PCT
Ahy20g1992 20 113094525 113095369 Ahy3g2749 3 120862979 120863780 PCT