Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1990 ATGAAGAGAAAACCTCATAAACCCGTCATATTGAGCTTCTTGTTCCCAATAACGAGATCCACCATTCTCATCCTCTCCATGGCTTCCCTCCTCTCCCTCTCGCTCTGCATCTTCCTCTCCCTCTTTCTTTCATCCTCCAACGCCCAACTTACCCCCTCCCTCCCTGTCCTTCAAGCATGCAAGGCCACGCGCTTCCCTCTCATATGCCACACCACGCTCAGTTCCATGACCCAAACAAATCCTGACCCAACCCCAGTCGAGCTCGTCCAGTCCGCCATTAATTCTTCCTACACCAAACTCCACGATGCCATCACCATGATCTCCTCCCTCTACGAGGACTCCATCGCCAGCAACCGCACCCGCGCCACCGCGGCCAAGACCTGCATTCAGATCCTCCGCTACTCCCGCCGCCGCACTTTCCTCGCCGCCGACGCCATCCCCCGGAATGCCACAAAAGACGCCCGCGCATGGCTCAGCGCCTCCTTGGCCTACCAGTACGGTTGCTGGTCCAGCCTCAAGTACGCCAACGACACCCTCTCCGTCGCGGAGGCGATGGTTTTTGTAGATTCCCTTACCTACATCACCAGCAACGCCCTCAGCATGGTCGCATCCTACGACCTCTTCGGCAACGACACCGCTTCATGGAGGCCGCCGTTAACGGAGCGTAACGGCTTCTGGGAGCCACCGGTCGCTTCGGGAGGGTTCGGATCGGGATATAAATTAGGAGTGCCGTCGAAATTGACGCCAGACGCTACCGTTTGCAAGAACGGGGATGGTTGTTACAGGACGGTGCAGGAGGCGGTTCACGCGGCGCCGGATAACCTTAAGGTCGGAGAACGGATGTTCGTGATTTACATAAAGGAAGGGGTATATGAAGAGAAGGTCAGGGTTCCGCCGAAGAAGAAGAATGTGGTGTTCTTGGGCGATGGAATGGGCAAAACCATCATCACCGGTTCCCGCAGCGTTGGGCTTATGCCTGGAATGTCAACCTATCACTCAGCCACCGTCGGGGTTCTTGGGGATGGATTCATGGCCAAGGATCTCACCATCCAGAACACGGCTGGTGCTGACGCGCACCAGGCGGTGGCCTTCCGATCGGACAGTGATCTTTCCGTCATTGAGAATTGTGAGTTCATTGGCAACCAGGACACACTCTATGCTCAAACCCTGCGCCAGTTTTACAAAAATTGCCGGATCATTGGCAATGTGGATTTCATCTTCGGAAATTCGGCGTCAATCTTCCAAGACTGTGAAATCCTGGTCAAGCCGAGGATAGTCGATCCGGAGAAGGGAGAGACCAATGCCATCACGGCACAGGGCAGGACGGACCCTGGTCAGTCGACCGGCTTTGTTTTCTGGAACTGCTCGTTTAATGGCACTGAGGAATATATGGCATTGTATCACAGCAAGCCTCAAGCACACAAGAACTATCTAGGTAGGCCATGGAAGGAGTATGCTAGGACAGTATTCATTCATTCAACCTTGGAAGCCCTGATTGCACCGGAGGGTTGGATGCCTTGGAGCGGGGACTTTGCGCTGTTGACGCTATACTATGGAGAATTCGAGAACTCAGGACCCGGTTCGAATTTGGCTAAAAGAGTTCCATGGAGCAGCAGGATCCCCAGTGAGCATGTGGATACTTACTCAGCTCAGAATTTCATTCAAGGAACTCATTGGATTCCGTCATCTCTGTGA 1695 0.541 MKRKPHKPVILSFLFPITRSTILILSMASLLSLSLCIFLSLFLSSSNAQLTPSLPVLQACKATRFPLICHTTLSSMTQTNPDPTPVELVQSAINSSYTKLHDAITMISSLYEDSIASNRTRATAAKTCIQILRYSRRRTFLAADAIPRNATKDARAWLSASLAYQYGCWSSLKYANDTLSVAEAMVFVDSLTYITSNALSMVASYDLFGNDTASWRPPLTERNGFWEPPVASGGFGSGYKLGVPSKLTPDATVCKNGDGCYRTVQEAVHAAPDNLKVGERMFVIYIKEGVYEEKVRVPPKKKNVVFLGDGMGKTIITGSRSVGLMPGMSTYHSATVGVLGDGFMAKDLTIQNTAGADAHQAVAFRSDSDLSVIENCEFIGNQDTLYAQTLRQFYKNCRIIGNVDFIFGNSASIFQDCEILVKPRIVDPEKGETNAITAQGRTDPGQSTGFVFWNCSFNGTEEYMALYHSKPQAHKNYLGRPWKEYARTVFIHSTLEALIAPEGWMPWSGDFALLTLYYGEFENSGPGSNLAKRVPWSSRIPSEHVDTYSAQNFIQGTHWIPSSL* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1990 564 SUPERFAMILY Pectin lyase-like 248 562 IPR011050 -
Ahy20g1990 564 Gene3D Invertase/pectin methylesterase inhibitor family protein 55 205 IPR035513 -
Ahy20g1990 564 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 38 562 - -
Ahy20g1990 564 Pfam Plant invertase/pectin methylesterase inhibitor 58 201 IPR006501 GO:0004857
Ahy20g1990 564 Pfam Pectinesterase 250 556 IPR000070 GO:0030599|GO:0042545
Ahy20g1990 564 Gene3D - 244 564 IPR012334 -
Ahy20g1990 564 CDD PMEI-like_3 59 206 - -
Ahy20g1990 564 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 58 202 IPR035513 -
Ahy20g1990 564 SMART PMEI_2 51 201 IPR006501 GO:0004857
Ahy20g1990 564 TIGRFAM PME_inhib: pectinesterase inhibitor domain 27 202 IPR006501 GO:0004857
Ahy20g1990 564 PANTHER PECTINESTERASE 38 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1990 Ahy-Chr20 112960495 112962970 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1990 59 559 Carbohydrate Esterase AT5G09760 62.227 0.0 655
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1990 - - gmx:100802102 725.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1990 20 112960495 112962970 Ahy20g1990 20 112960495 112962970 ECH
Ahy20g1990 20 112960495 112962970 Ahy10g1553 10 90441698 90444194 hybridization
Ahy13g3083 13 123937030 123940139 Ahy20g1990 20 112960495 112962970 PCT
Ahy3g2751 3 120975514 120978464 Ahy20g1990 20 112960495 112962970 PCT
Ahy20g1990 20 112960495 112962970 Ahy13g3083 13 123937030 123940139 PCT
Ahy20g1990 20 112960495 112962970 Ahy3g2751 3 120975514 120978464 PCT