Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1980 ATGGTGGGAACATCAAGCTCAGACGAAGGTGCAGGGCATCTAGAGCCTCTTGATCCCGATGTGCTTGAAATTGATCCTACCGGTCGCTACATTAAGTATAAAGAAATGATCGGCAAAGGAGCTTTCAAGACTGTTTACAGGGCATTTGATGAAGTCAATGGACTCGAAGTTGCTTGGAGCCAGGTTCGGATTGATGAAGTACTACAGTCACCAGATGACTTAGAGAGGCTGTACTCGGAGGTGCATCTCTTGAGGTCATTGAAACACAATAACATAGTAAGGTTCTACAATTCTTGGATTGACGACAAACACAGGACAGTTAACATGATTACAGAGCTTTTCACCTCGGGGAGCCTCAGACAGTATTGTAAGAGACACAAGAAGATCAACATTAAGGCTATTAAGGGATGGGCCAGACAAATTTTAATGGGTTTAAGCTACCTCCATAATCACAGCCCTCCAATTATACATAGGGACCTGAAATGTGATAATATATTTATAAACGGTCACCAAGGAGAAGTGAAAATTGGAGATCTGGGATTAGCAACTCTCTTGAAAGAGGGTAATGCTAAGAGCGTAATTGGAACTCCGGAGTTTATGGCACCTGAACTGTATGATGAAAGTTACAATGAGCTAGTTGACATATATTCTTTCGGGATGTGCATGCTTGAGTTGGTGACTTCTGAGTATCCTTACAGTGAATGTAGAAATTCAGCTCAGATATTCAAGAAAGTTTCAACTGGTGTAAAGCCCTTTGGTCTTTCTAAAGTCAAAGATCCAGATGTAAAATCATTTATTGAGAAATGTCTTGTCCCTGCATCTCAAAGATTGTCAGCTAAGGAGCTTCTCATGGATCCTTTTCTCCAAGCCAATGGTTCAGTAACAAATCGTCCTCTTCCATTACCAGATATTGTTCTTCCCAAATTTGGAGCCTTTGAAAATCGTTGCCTGATGTCAGAAGGTCCTGCTAGTGCACGAATAGGATCCATTCCCATGGATCCTGGTGGTACCAATGAGCTACCAGTGACTGCTGTATTTTATAATAATAATGGTGATGATGGAACACCTTCTCCATGTGTTGAGATACGAAGGCAGAAGGGAAGTGATATTTTCTTTCTGAGAGGCGAAGAAAATGATGAGAACTCGGTGTCTTTAGTTCTCCGAATAGCTGATCAGAGTGGGCGGGCAAGAAATATCCATTTCATATTTTACCTCAGCAGTGATACAGCCATCTCAGTTTCAACGGAAATGGTTGAGCAACTTGATCTTGCTCAGCAGAATGTTAAATTCATAGCTGAGATAATTGACTTGTTATTGATGACTTTGGTTCCTGATTGGAAACCTTGTGTACCGGTTGATCATCTGGCTTCTCCAAATGTTAGATGGACACACTCGAGCCAACAGAACAGCTCTGGGTTTTCAATGTTCAAAAATAGTTCGGAAGGTGGTAGCCAAACTGCAAATAAAAATGCAGGTACAACATTGATTTCAAGGTCAGCACAAAGAGGAAACAATGAGAATACAACTTTTCACAAGGCATGGTCTCAAGCAAGCATTGGTCTTCAAGAAGGAACAATGGCAGATGATTTGCGTTCAGAGATGTCGTATACTTCTGCAACGTCTAACTTAGCCGGCAAGAATTTGTCCATGGTTTCATTGGCTTCATTGGTGTCTGCTAACTCAGAATTTGCAGACTTGGGTCTTACTAGGACGATCGGAGGTAGTCAATCCTCGTTTGATTATGAAACTGAGGTATCACATGACATGGAAAGTGATGGTATGATGAACTCCTCCTCCACTCATCCCCCCAATGTTTCTTCCGTGTCTGAACCTCAGGATGAGTTAAGAATAGAGTTAGCAAAGGTTGAACAGCAATACCAAGATGCAATTAAAGATTTATCAGAAAGGAGATACCTTGCCATAATGGAAACTAGGAGGAGGCTGGCGCAAAAGATGCCATTATAG 1965 0.4163 MVGTSSSDEGAGHLEPLDPDVLEIDPTGRYIKYKEMIGKGAFKTVYRAFDEVNGLEVAWSQVRIDEVLQSPDDLERLYSEVHLLRSLKHNNIVRFYNSWIDDKHRTVNMITELFTSGSLRQYCKRHKKINIKAIKGWARQILMGLSYLHNHSPPIIHRDLKCDNIFINGHQGEVKIGDLGLATLLKEGNAKSVIGTPEFMAPELYDESYNELVDIYSFGMCMLELVTSEYPYSECRNSAQIFKKVSTGVKPFGLSKVKDPDVKSFIEKCLVPASQRLSAKELLMDPFLQANGSVTNRPLPLPDIVLPKFGAFENRCLMSEGPASARIGSIPMDPGGTNELPVTAVFYNNNGDDGTPSPCVEIRRQKGSDIFFLRGEENDENSVSLVLRIADQSGRARNIHFIFYLSSDTAISVSTEMVEQLDLAQQNVKFIAEIIDLLLMTLVPDWKPCVPVDHLASPNVRWTHSSQQNSSGFSMFKNSSEGGSQTANKNAGTTLISRSAQRGNNENTTFHKAWSQASIGLQEGTMADDLRSEMSYTSATSNLAGKNLSMVSLASLVSANSEFADLGLTRTIGGSQSSFDYETEVSHDMESDGMMNSSSTHPPNVSSVSEPQDELRIELAKVEQQYQDAIKDLSERRYLAIMETRRRLAQKMPL* 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1980 654 MobiDBLite consensus disorder prediction 471 490 - -
Ahy20g1980 654 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 651 - -
Ahy20g1980 654 ProSitePatterns Serine/Threonine protein kinases active-site signature. 155 167 IPR008271 GO:0004672|GO:0006468
Ahy20g1980 654 Pfam Protein kinase domain 33 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy20g1980 654 MobiDBLite consensus disorder prediction 1 20 - -
Ahy20g1980 654 SUPERFAMILY Protein kinase-like (PK-like) 33 289 IPR011009 -
Ahy20g1980 654 Gene3D - 381 447 - -
Ahy20g1980 654 MobiDBLite consensus disorder prediction 589 613 - -
Ahy20g1980 654 ProSiteProfiles Protein kinase domain profile. 31 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy20g1980 654 MobiDBLite consensus disorder prediction 590 611 - -
Ahy20g1980 654 CDD STKc_WNK 29 288 - -
Ahy20g1980 654 Coils Coil 612 632 - -
Ahy20g1980 654 SMART serkin_6 31 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy20g1980 654 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK6-RELATED 1 651 - -
Ahy20g1980 654 Gene3D Transferase(Phosphotransferase) domain 1 114 296 - -
Ahy20g1980 654 Gene3D Phosphorylase Kinase; domain 1 16 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1980 Ahy-Chr20 111790757 111794150 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1980 131 506 MAP Kinase Kinase Kinase AT1G49160 61.702 2.95e-164 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Ahy20g1980 Pkinase 1.30E-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1980 K08867 - gmx:121175054 851.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1980 20 111790757 111794150 Ahy20g1980 20 111790757 111794150 ECH
Ahy20g1980 20 111790757 111794150 Ahy10g1545 10 89905816 89909224 hybridization
Ahy13g3092 13 124747468 124751087 Ahy20g1980 20 111790757 111794150 PCT
Ahy3g2758 3 121381261 121384673 Ahy20g1980 20 111790757 111794150 PCT
Ahy20g1980 20 111790757 111794150 Ahy13g3092 13 124747468 124751087 PCT
Ahy20g1980 20 111790757 111794150 Ahy3g2758 3 121381261 121384673 PCT