Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1975 ATGTATGCTTCAACTTCATTCACTTCACCTCTGATCCATGAACTTCTTTTAGAATTCCACTCAAGAAGGTTACTCTTACACACTACCCCGTCATTCAACCAATCACCAAGCTCATCACCCAACCCACCAAATAGCCCCCAAAGCTCATCACCAGAATCATCATACCTTGGAGATGGAACCTTTGATGCAAATGTTGTAATGGTACTCTCAGTACTTTTATGTGCTCTAATATGCTCACTTGGATTAAACTCCATCATAAGGTGTGCATTAAAGTGTTCCAGCTTAGTTGTGAGTACCAATAATAGTGATAGTAATAATAACCACCACACTTCATCATCAAGAGTGGTCAACACCGGAATCAAGAAGAAAGCACTCAAGACTTTTACAACACTAAGTTACTCAAATGAACTCAACCTTCCTAGTTTGGACTCAGAGTGTGTGATATGCTTGTCTGATTTCGCCCTCGGCGACCGGTTGCGGATTTTGCCTAAGTGCAACCATGGTTTCCACATAAAGTGCATTGATAAATGGTTGAGTTCGCATTCTTCTTGCCCCAAATGCAGACACTGCCTTATGGAGACTTGCCACAAGATTGTTGGGGCTACTACCTCATCATCATCATCACAATTGCCAGAAACTATTCTTACCATAGCACCATTGGACCCAGAACGTTTGGTGCGTAACTATAGGGAATCCAATTAA 702 0.4174 MYASTSFTSPLIHELLLEFHSRRLLLHTTPSFNQSPSSSPNPPNSPQSSSPESSYLGDGTFDANVVMVLSVLLCALICSLGLNSIIRCALKCSSLVVSTNNSDSNNNHHTSSSRVVNTGIKKKALKTFTTLSYSNELNLPSLDSECVICLSDFALGDRLRILPKCNHGFHIKCIDKWLSSHSSCPKCRHCLMETCHKIVGATTSSSSSQLPETILTIAPLDPERLVRNYRESN* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1975 233 SUPERFAMILY RING/U-box 125 193 - -
Ahy20g1975 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 193 IPR013083 -
Ahy20g1975 233 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 232 - -
Ahy20g1975 233 PANTHER RING-H2 FINGER PROTEIN ATL78 1 232 IPR044602 GO:0016567|GO:0016740
Ahy20g1975 233 MobiDBLite consensus disorder prediction 30 54 - -
Ahy20g1975 233 ProSiteProfiles Zinc finger RING-type profile. 146 188 IPR001841 -
Ahy20g1975 233 CDD RING-H2_PA-TM-RING 145 188 - -
Ahy20g1975 233 Pfam Ring finger domain 145 188 IPR001841 -
Ahy20g1975 233 SMART ring_2 146 187 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1975 Ahy-Chr20 111061401 111062461 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1975 44 192 C3H Transcription Factor Family AT3G10910 43.046 4.56e-40 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1975 K19040 - gmx:100807227 287.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1975 20 111061401 111062461 Ahy10g1538 10 89465686 89466709 hybridization
Ahy13g3096 13 124822159 124823171 Ahy20g1975 20 111061401 111062461 PCT
Ahy3g2763 3 121498564 121502833 Ahy20g1975 20 111061401 111062461 PCT
Ahy20g1975 20 111061401 111062461 Ahy13g3096 13 124822159 124823171 PCT
Ahy20g1975 20 111061401 111062461 Ahy3g2763 3 121498564 121502833 PCT