Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1964 ATGGAAAACTCGACCTTACCGGAAAATAGCATAGAGAACAGGAAGGTGGCGGTAGCAGCGGCGGAAGGCGACAGCGTATCGTCCGATGGTTTGAAAGGCGAAGATGGTGAGCGGAACTCAAGCGGCGCGAACCGGTGGCCGCGAGAAGAGACAATGGCTTTGATAAAAATTAGGTCTGAAATGGACGGCGCCTTCAGAGACATCAGCCCCAAAGCCCCTCTTTGGGAACAAGTCTCAAGGAAATTAGGTGAGCTGGGATATGAAAGGAGTGCGAAGAAGTGTAAAGAGAAGTTTGAGAATATTTACAAGTACCATAGGAGGACCAAGGAAGGCCGTTCCGGAAAGCGTAACGGAAAAACTTACCGTTTCTTTGATCAACTCGAAGCATTAGACCCGCACCCTAACAATAACGCCGTTATTCAAGATGCGGTTCCTTGTTCCGTTAGGTTTCCGGTTACTGCAATGGAGCATTCCAGTTCCGCCACTTCGTCTTACTCGAGCGGCGGGGGTGAAGACGAAGGTGAAGGGAGGAGGAGGAAGAAGAAGAGGAGGCTGAGGGTGTTCTTTGAGGGGCTTATGAGGGAGGTTTTGGAGAAGCAAGAGAGCCTGCAGAAGAAGTTCATGGAAGTTCTCGATAAGTGCGACCAGGATCGAATGGCGAGGGAGCAAGCATGGAAGACGGAGGAGCTTGCCAGGATCAAGAAGGAGCGCGAGCTTCTCGCTCAGGAACGGTCGATTGCCGCCGCCAAGGACGAAGCGGTTATGTCCTTCATAAGAAAGTTTGCAGAAAACAGCAACAACAATGGCGCGCTGCAATTTCCAGCTGATAATAATAACCACCTCCAGGAGCAGGAGAAGGAGAAGGAGAAGGAGAAAGACGAAGTTGGGAATGGCATCAATGTTGGGAATTTTGTGCACATGAGCTCTTCGCGGTGGCCTAAGGATGAAGTGGAGGCATTGATAAGGCTGAGGACACAAGTGGATGAGCAGTTACAGCAGCAGCAAGGGAACAAGGGACCGCTTTGGGAGGAGGTGTCTACGGCCATGAAGGGACTCGGATACGATCGGAGCGCAAAGAGGTGCAAGGAGAAGTGGGAGAACATCAACAAGTACTTCAAGAGAATGAAGGAGAAGAACAAGAGGAAGCCCGAGGACTCTAAAACATGTCCCTATTATCACCATCTTGAGGCCATATACAGCAAGAAGCCCAAGAACAATAACAAGCTTGATGATAATGATAATGACAAGAAGAACGAGTTGAAGCCTGAAGAGCTTTTGATGCATATCATGAATGGTCAAGAAGAGAGGCAGCAGGATCCAGATCAAGATCAGTCTTCATCTGAAGATGCAGACAGAGACAACCATAATGGATATCAGATGCTTGATAATAGTCCTTCTTCCATACCAATCATGAGTTAA 1419 0.4884 MENSTLPENSIENRKVAVAAAEGDSVSSDGLKGEDGERNSSGANRWPREETMALIKIRSEMDGAFRDISPKAPLWEQVSRKLGELGYERSAKKCKEKFENIYKYHRRTKEGRSGKRNGKTYRFFDQLEALDPHPNNNAVIQDAVPCSVRFPVTAMEHSSSATSSYSSGGGEDEGEGRRRKKKRRLRVFFEGLMREVLEKQESLQKKFMEVLDKCDQDRMAREQAWKTEELARIKKERELLAQERSIAAAKDEAVMSFIRKFAENSNNNGALQFPADNNNHLQEQEKEKEKEKDEVGNGINVGNFVHMSSSRWPKDEVEALIRLRTQVDEQLQQQQGNKGPLWEEVSTAMKGLGYDRSAKRCKEKWENINKYFKRMKEKNKRKPEDSKTCPYYHHLEAIYSKKPKNNNKLDDNDNDKKNELKPEELLMHIMNGQEERQQDPDQDQSSSEDADRDNHNGYQMLDNSPSSIPIMS* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1964 472 MobiDBLite consensus disorder prediction 28 44 - -
Ahy20g1964 472 CDD GT1 44 109 - -
Ahy20g1964 472 ProSiteProfiles Myb-like domain profile. 38 102 IPR001005 -
Ahy20g1964 472 MobiDBLite consensus disorder prediction 399 472 - -
Ahy20g1964 472 PANTHER - 1 471 - -
Ahy20g1964 472 CDD GT1 310 376 - -
Ahy20g1964 472 ProSiteProfiles Myb-like domain profile. 310 369 IPR001005 -
Ahy20g1964 472 MobiDBLite consensus disorder prediction 18 49 - -
Ahy20g1964 472 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2-LIKE 1 471 - -
Ahy20g1964 472 Coils Coil 232 252 - -
Ahy20g1964 472 SMART sant 42 104 IPR001005 -
Ahy20g1964 472 SMART sant 308 371 IPR001005 -
Ahy20g1964 472 MobiDBLite consensus disorder prediction 157 180 - -
Ahy20g1964 472 MobiDBLite consensus disorder prediction 399 456 - -
Ahy20g1964 472 Pfam Myb/SANT-like DNA-binding domain 310 398 IPR044822 -
Ahy20g1964 472 Pfam Myb/SANT-like DNA-binding domain 44 130 IPR044822 -
Ahy20g1964 472 Gene3D - 46 107 - -
Ahy20g1964 472 Gene3D - 312 374 - -
Ahy20g1964 472 MobiDBLite consensus disorder prediction 457 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1964 Ahy-Chr20 110207343 110209762 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1964 179 405 Trihelix Transcription Factor Family AT1G76890 46.502 1.48e-65 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Ahy20g1964 Myb_DNA-bind_4 2.30E-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1964 - - aip:107623117 827.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1964 20 110207343 110209762 Ahy20g1964 20 110207343 110209762 ECH
Ahy20g1964 20 110207343 110209762 Ahy10g1531 10 89079977 89082248 hybridization