Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1961 ATGTCCATGCGCCCATTCCTCCCCAAATGCCTCTTCTTCAGCTCTTCGCCAGCTCGTGCTCTTCTTCTTCTTCCACTTCAACTCAGCCAATTCTCGTCTTCGTCGCATTCGCCTTCGTATCATCCGAGACGGTTAGAGGAGGAGTCACGCCACGTGAGGGTGTCGGTGTGGTGGGACTTCGAGAACTGCCAAGTGCCGAACACCATCAACGTGTCCAAGATCGCCACCGTCATAACGGACGCCGTTAGAGCCAACGGTATTAAGGGGCCCGTCCATATAACGGCCTTCGGCGATGTCTTGCAGCTTTCTAGATCCAACCAGGAGGCACTTTCATACACCGGCATTCATCTTGCCCACGTTCCCAATGGTGGAAAGAATAGTGCTGATAGATCTCTTCTTATTGATCTTATGTGTTGGGTTTCTCAAAACCCGCCACCTGCGCATCTCTTTCTGATTTCTGGGGATAAAGACTTTGCTGGCATATTGCACCGCTTAAGAATGAATAACTACAACATCCTGCTTGCAACTCCAGGATCAGCTTCTGATGTGCTATGCGCTGCAGCAACTATAATGTGGCACTGGCCATCTTTGCTTAAGGGAGAAGAACTTACTGGAAAGCATTTCAATCATCCTCCAGATGGCCCTGTTGGTTCTTGGTATGGAAATTATAAGGTGCCTCTTGAAAATCCCTTCTCAGCTAGTGAGCAGTCTGCATCTTGTCAAAAAGCAGAAAGCTGTGAATCTCCCCCAATTCCTAAGTCAGTTGCAAGGCAGGTTAGGAAAATATTAAGTTCGCATCCAAAAGGGATGTCCATTACAGATTTTCGTGCGGAGTTGGCTAAAAATAATGTGCAATTGGAGAAATCATTCTATGGACAGAAAAAGTTTTCCCGTTTTCTTCTATCAATACCACACGTACAGCTCAAGCATTTAGGTGAAGGTGTTTATTTTGTGTGTTTGGCTCCCTCAGAGTTTCCCAAACCCCTTGCAAGCAATGATGGGCCATCAAAAACACCTGCTGTTGGGAATGAAGCACCTCAAAAGTTGAATGGTGAGAGTAAAAATACGCCTAGAGATGTAGATAGGACGCCTTCAATGCCCTCATTGCATGAAAGGAGTAGTGCGAAGATTGGGAATATGACTGATGCACAATTGTCTAAGGTTCAACTGCCACAAAAAGACAAGGAAGTTTCACGATTTAAGGCAGATAATGAGATTGTAACGCCTGACGAGATAAGTCTCAATAAATCTGGAAAACCTACTTCATCAGATGACCACTCTGCTCAGAACACATTGGTGGAAAACAATCTTGTTGATGATGAATCTGGAAAATATATAGCTGAGTACAAAAATGAGGTGCCAACTAGAGGGGATGCTGATGAGGTTTGTCAAAGCTCTTATTCTTTGCCAGTTGATGACTTCATGGTTGAGAAGAGGCATGGCGGGAGTGTTGAAACTCATAGCAAAAGTTCAATATTTGGTTGGATTAGAAGTTGGTTTCCATTTTGGAAAAGAAATGCTAAATCTGATGATTTAACCACTAATAAGACCAGCATGGATAGTCACTCTGAGTTTGAGGAGCCCAAGTTATCTCAACTGGACATGGCAGTAAGTCATTCGGAGGAGCCCAAGCTATGTCAACCAGAGATGGCTGTAAGTCATTCGGAGGAGCCCAAGCTATGTCAACCAGACATGGCTATAAGTCATTTGGAAGAGCCCAAGCTATCTCAAGTGGACGAGACTATAAATCATTCTGAGGAGTCCAAGTTATCTGAACAGAACCAGAGTGTTATTCATGCTGAAGAGCCGAAAATATCAGATCAGGCGCCCATGTTATCTGAGCCAAACCAGATTGTTAGTCATTCTGTAGAGACCAAATTATGTGATCGGGACCAGACTGTTTCTCAGTCTGTAGAGGCCAACACATCAGAAGTGAACCAGAATGTTGGTCATTCTGACAAGCCCGAGTTATTTTTTAGAGATTCCTTTTGGAATTACATGGAATCTTTTGTTTTTACCACCCAAGGATCAGTTCTCGTCTCCCTGTCAACAAGCAGGGAGGATTTGGCACAAAAATTACAAAAGGGCGGTCCTGCGGTTCTCGAGTCTCTCACTGAAAAGGATATTCTTCAACTGATTGATTTATTAATAGCAGACAAGAAATGGTTGGAGGTAAGCGGCTCCACAAAATATCCATTTAAGGTGACTCGACCAGTTCAGAAGAACTCATCAATGGGCCTTTCTCATGGTGCGAATGGCCTTCGGTCTCTCTTTTTAAATAGAGCATCACAGTCCAACCTGCAGAAATTACTTGAACATGATGCAGAGAAACACAATCAGAATACTCCTCATACTAGTGTTTTGAAACTTGCCACTGAAAAACTATATGCTGAGAGGTCTAGAAATGATATATTAGTAGACTGCCAAAAAGTTGTGGATGAAATATTGAGAATCCACCCAGAGGGATACAATATTGGTTGTTTCCGAAAACTATTTTATGAGATGTGTGGCTATCATATTAATTTACAGAAGCTCGGTTATAAAAATTTGGCATCCTTATTGCAGACAATGCAGGGAGCTAAATTAGAGTCCACTAATATTTTTCCTTCTGTTCCTGCTGATGTTTGTTATTCTGACCGGGAAACTTCAATCCTCAAAACTCAAGTTACCAGGGCTAGTCATGCAGTCACCTACTCAGATAGTGAATTGTCTGGTTCAGCTCCAAAGGATGATAGCATGGACTCTCCATGGGAAGAATTAGGTCCTATTTCTGCCAAAAATTCTGACCAGAGTGATGTGGAATCAGAATTAAGTAGGAATGCCAAAGAACTGGATAATACCTCAAAGTATCCTGATTATGAACCTGTTGGCTTAGATTATGATCCTTCTGAGTCTGAAGAAGATAGTACCTGTTTAACTCAACCAGAAGAGCAAGGAAAGCGAAGATGTAATGAGCAAGACAGTTCTCTTCTCAAAGTTTTGGATTTCTGGCACTGTAGAAAGGAAGGAGAGAATAGTGCAAAGAATTCAGATAGTGTTGACATCTTTAATAATGATTCTCTGAAAAGGATTTTGAATCCATCGGGCAAGTCATCTCAGGGTGCCCTTTCCAAAATTCCTTCAGGGAACTATAGAGAGAAGCATAGTTCTCGAAAGAGCTATTCATTTGTAGCTGATCCACTTTTATCCCCGAAGGACAAACTGATTGATGGGATGCTTGATGGCTTCAAGAAAACAGATGAGACTAAGATGCAAAATTGA 3261 0.4256 MSMRPFLPKCLFFSSSPARALLLLPLQLSQFSSSSHSPSYHPRRLEEESRHVRVSVWWDFENCQVPNTINVSKIATVITDAVRANGIKGPVHITAFGDVLQLSRSNQEALSYTGIHLAHVPNGGKNSADRSLLIDLMCWVSQNPPPAHLFLISGDKDFAGILHRLRMNNYNILLATPGSASDVLCAAATIMWHWPSLLKGEELTGKHFNHPPDGPVGSWYGNYKVPLENPFSASEQSASCQKAESCESPPIPKSVARQVRKILSSHPKGMSITDFRAELAKNNVQLEKSFYGQKKFSRFLLSIPHVQLKHLGEGVYFVCLAPSEFPKPLASNDGPSKTPAVGNEAPQKLNGESKNTPRDVDRTPSMPSLHERSSAKIGNMTDAQLSKVQLPQKDKEVSRFKADNEIVTPDEISLNKSGKPTSSDDHSAQNTLVENNLVDDESGKYIAEYKNEVPTRGDADEVCQSSYSLPVDDFMVEKRHGGSVETHSKSSIFGWIRSWFPFWKRNAKSDDLTTNKTSMDSHSEFEEPKLSQLDMAVSHSEEPKLCQPEMAVSHSEEPKLCQPDMAISHLEEPKLSQVDETINHSEESKLSEQNQSVIHAEEPKISDQAPMLSEPNQIVSHSVETKLCDRDQTVSQSVEANTSEVNQNVGHSDKPELFFRDSFWNYMESFVFTTQGSVLVSLSTSREDLAQKLQKGGPAVLESLTEKDILQLIDLLIADKKWLEVSGSTKYPFKVTRPVQKNSSMGLSHGANGLRSLFLNRASQSNLQKLLEHDAEKHNQNTPHTSVLKLATEKLYAERSRNDILVDCQKVVDEILRIHPEGYNIGCFRKLFYEMCGYHINLQKLGYKNLASLLQTMQGAKLESTNIFPSVPADVCYSDRETSILKTQVTRASHAVTYSDSELSGSAPKDDSMDSPWEELGPISAKNSDQSDVESELSRNAKELDNTSKYPDYEPVGLDYDPSESEEDSTCLTQPEEQGKRRCNEQDSSLLKVLDFWHCRKEGENSAKNSDSVDIFNNDSLKRILNPSGKSSQGALSKIPSGNYREKHSSRKSYSFVADPLLSPKDKLIDGMLDGFKKTDETKMQN* 1087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1961 1086 CDD LOTUS 252 320 - -
Ahy20g1961 1086 ProSiteProfiles OST-type HTH domain profile. 804 881 IPR025605 -
Ahy20g1961 1086 PANTHER LIMKAIN B LKAP 12 1021 IPR024768 GO:0005777|GO:0010468|GO:1903231
Ahy20g1961 1086 Gene3D - 799 865 IPR041966 -
Ahy20g1961 1086 CDD LOTUS 807 857 - -
Ahy20g1961 1086 MobiDBLite consensus disorder prediction 1024 1039 - -
Ahy20g1961 1086 MobiDBLite consensus disorder prediction 896 984 - -
Ahy20g1961 1086 MobiDBLite consensus disorder prediction 410 429 - -
Ahy20g1961 1086 MobiDBLite consensus disorder prediction 932 949 - -
Ahy20g1961 1086 MobiDBLite consensus disorder prediction 330 429 - -
Ahy20g1961 1086 PANTHER EMB|CAB71880.1 12 1021 - -
Ahy20g1961 1086 Gene3D - 252 319 IPR041966 -
Ahy20g1961 1086 Gene3D - 45 194 - -
Ahy20g1961 1086 MobiDBLite consensus disorder prediction 367 388 - -
Ahy20g1961 1086 Pfam OST-HTH/LOTUS domain 252 316 IPR025605 -
Ahy20g1961 1086 Pfam OST-HTH/LOTUS domain 809 860 IPR025605 -
Ahy20g1961 1086 MobiDBLite consensus disorder prediction 1024 1055 - -
Ahy20g1961 1086 MobiDBLite consensus disorder prediction 392 406 - -
Ahy20g1961 1086 Pfam NYN domain 53 188 IPR021139 GO:0004540
Ahy20g1961 1086 CDD PIN_limkain_b1_N_like 53 177 - -
Ahy20g1961 1086 ProSiteProfiles OST-type HTH domain profile. 251 322 IPR025605 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1961 Ahy-Chr20 109929984 109934854 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1961 52 200 C2H2 Transcription Factor Family AT5G61190 45.638 4.47e-37 149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1961 20 109929984 109934854 Ahy20g1961 20 109929984 109934854 ECH
Ahy20g1961 20 109929984 109934854 Ahy10g1528 10 88765710 88770590 hybridization