Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1960 ATGGATTTGGATGATTTCCGATCCATATTGGATACTGCCGGCGTTGACGTTTGGCTCTTCATCGACACCGCCATCACCGTCGCCTCCTTGGATTGCGGTGACGAGCTGAGGCGACGGAGGGATGGAATCATAGAACGAATCTTCGCTGCCACAACACCTCCTCTGCCGTGCCGGAACTGCGACGGCGATCGTAACCTGAGGTCCAATGGCCACCAAATCAAGAAACGCCTCAGCCCTAGCCCTAGCCCTCAGCGACAACACAGCCACCACCAGCAACGTCGTGGTGGCCGTGGTGCCGCCGCTGCAGTTTCTCCCTCAACGCCGCAGTCTCTCGGAGATGATGATGACAACGGCCACGCCGACGCCGACGCCGCCGAAGACGACCGTGAAGATTTGGATCCTTACGGCGGCTTGTTCGATGATGAGCAGAAGAAGATTCTAGAGATTAAAGAGCAGCTCGAAGAACCTGACCAGTCTGAAGAATCGTTGGTGGAGCTGCTGCAAAATCTCGCAGACATGGATATTACATTCCAAGCGTTAAAGGAGACTGACATTGGGAGGCACGTGAATCGGTTGCGGAAGCATTCCTCCAATGACGTTCGCAGATTGGTGAAGCTACTTGTGAGGAAGTGGAAGGAAATTGTGGATGAGTGGGTGAGGTTGAATCAACCGGGTGGAGCAGCTTCTCTCATGGCTGATGGGGACTCTCCACCGCTGAAAACCACCCAAAACGGGCATCATCAGATTCCTGATTTTGCATACTCGCCAAATCCACACAATGGAAGTTCTGGGTCTGACCGTAACACCTCAGAGGCAGAACCAAAACCAAAAGTGATTCCCCGCAAAGAAGCTCCGCCAAAACCAACGCCGCCACCTTCAGTCCCTACTCCTTCCATCGCCTTCCAAAATAGACAGAGAGAACAAAGAGATAGAGATTTTGACGCGGAGAGGCTTGCTTCGGCAAGGAAGCGGCTTCAAGAGAACTACAAAGAGGCTGAAAATGCGAAAAAGCAAAGAACGATTCAGGTGATGGACATCCACGAGTTACCAAAGTCAAAACCCAAGAATGCCTTCTTTGGAAAGAACAAAGGCAGTGGCGGTTCTCAGGGAAGGCACTGGTGA 1122 0.525 MDLDDFRSILDTAGVDVWLFIDTAITVASLDCGDELRRRRDGIIERIFAATTPPLPCRNCDGDRNLRSNGHQIKKRLSPSPSPQRQHSHHQQRRGGRGAAAAVSPSTPQSLGDDDDNGHADADAAEDDREDLDPYGGLFDDEQKKILEIKEQLEEPDQSEESLVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKLLVRKWKEIVDEWVRLNQPGGAASLMADGDSPPLKTTQNGHHQIPDFAYSPNPHNGSSGSDRNTSEAEPKPKVIPRKEAPPKPTPPPSVPTPSIAFQNRQREQRDRDFDAERLASARKRLQENYKEAENAKKQRTIQVMDIHELPKSKPKNAFFGKNKGSGGSQGRHW* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1960 373 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 140 225 IPR035441 -
Ahy20g1960 373 MobiDBLite consensus disorder prediction 229 373 - -
Ahy20g1960 373 MobiDBLite consensus disorder prediction 304 354 - -
Ahy20g1960 373 MobiDBLite consensus disorder prediction 73 137 - -
Ahy20g1960 373 MobiDBLite consensus disorder prediction 283 297 - -
Ahy20g1960 373 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 144 224 IPR035441 -
Ahy20g1960 373 Pfam TFIIS helical bundle-like domain 166 215 IPR017923 -
Ahy20g1960 373 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 373 - -
Ahy20g1960 373 Coils Coil 315 342 - -
Ahy20g1960 373 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 373 IPR044790 -
Ahy20g1960 373 SMART TFS2_5 146 217 IPR003617 GO:0005634
Ahy20g1960 373 MobiDBLite consensus disorder prediction 236 269 - -
Ahy20g1960 373 ProSiteProfiles TFIIS N-terminal domain profile. 141 218 IPR017923 -
Ahy20g1960 373 CDD TFIIS_I 143 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1960 Ahy-Chr20 109924524 109928061 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Ahy20g1960 Med26 3.70E-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1960 - - aip:107622503 651.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1960 20 109924524 109928061 Ahy20g1960 20 109924524 109928061 ECH
Ahy13g3104 13 125007420 125009790 Ahy20g1960 20 109924524 109928061 ECH
Ahy20g1960 20 109924524 109928061 Ahy10g1527 10 88760382 88763848 hybridization
Ahy13g3104 13 125007420 125009790 Ahy20g1960 20 109924524 109928061 PCT
Ahy3g2779 3 121843616 121846051 Ahy20g1960 20 109924524 109928061 PCT
Ahy20g1960 20 109924524 109928061 Ahy13g3104 13 125007420 125009790 PCT
Ahy20g1960 20 109924524 109928061 Ahy3g2779 3 121843616 121846051 PCT