Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1956 ATGTTAATTCTTAGTGAGAATCATTTAACCGGCTCTCTTCCGGAGTTCGCAAGTAACCTGAACCTCAAGATTATGGACATGAGCAGGAACAGAATTGGTGGAACTATACCATCAAGTTTGGAGAAGTGCACTAATCTTATCGAAATAAATTTGTTAATGAACAAATTTACTGGCATCATACCATCACAGCTTGGAATGCTTCTAAATCTTGAGGTTTTAAATCTTGCACATAACAGCTTGGAAGGTACTCTGCCAAATCAGCTGTCAAATTGTGCTAAAATGGATAGTTTTGATGTTGGATTCAATTCCCTCAATGGATCATTCCCATCAAGTTTACAGAGTTGGACGGATTTAACAACATTGATTTTAAGAGAGAATCGTTTTACAGGGAGTATCCTAACTGTTCTTTCAGAATTTAACAAGCTCCATGATTTACAGCTTGGCGGAAATTTGTTTGGAGGAAAAATTCCTCCATCGTTAGGAAAGTTGAAGAATCTGATCTATGGATTAAATCTAAGTGCTAATGGATTGACAGGTGAAATTCCATTTGAAATTGGGAAGCTAAAAGTACTGTCTAGTCTGGATTTATCCTCAAACAATTTGACAAGAAGCATGGATGTTCTTGGTGAACTTTCGTTGGACAACTTGAATATTTCATACAATTTCTTGCATGGTCCAGTATCAAAAACTCTGATGAATTTCTTAAATTCCTCACCATCTTCATTCTTGGAAAATCCATATCTCTGTGTCAGTTTTTCAGCTTCTCATAGGTCAAATCGCACCAAAGCTTGTTACTTGAAGCCATCTGTCTACAAATCAACTTATCATTTAGGTATCAGTATAAGTGCAATGGTGATGATAGAACTTGGTTCCACAATATTGGTTTCTGGCATGCTAATAGCACTAGTTTTTTGCCGGTTAAATGCCTATGATTCAATGCTTTCACATGGTGAAAATAAAAAAGAAGATATTAACTTGGGTTTACCTTGGAATTGTGGCATGCTCAAGGATGCTATGATCAAAGTAGATGATGGGTGTATTGTTGGCAGAGGAGCCTATGCAATAGTTTATAAAGTCCACAATCAAGGTCTAGTTCTTACTGTACAGAAGAGTGTATTTAGAGGAAAGGACAACAAGCGCTTAGGAATTATGAAAAGAGAAATCAAAACCCTCTATATGATTAAGCACAGAAATTTGGTAAGAATCTTGGGATACAGTGTGGCTAAGGACTATGGTGTAATGTTCACTCACTACATGGAAAATGGAAGCCTTCATGATATTTTGCATAGGAACATTCTATCACCACCCTTAATCTGGAATGTTCGGCTTAAGATAGCTGATGGAATTGCACAGGGACTAAAATACCTGCATTATGACTGCGATCTACCAATAGTGCACCGAGACATCAAAGCACAGAATATACTCCTTGATGTTGAGATGGAGCCTCATATTTCAAATTTTGGTACTGCCAACATCAGGAACCTAACTGAGGATTCTTATACTCATTCTAATCTCCCTTGGCAAAAGCTTTCAGCACGTATAGCTGGTACTGCTGGCTATATGGCACCAGGTAACTAA 1578 0.3752 MLILSENHLTGSLPEFASNLNLKIMDMSRNRIGGTIPSSLEKCTNLIEINLLMNKFTGIIPSQLGMLLNLEVLNLAHNSLEGTLPNQLSNCAKMDSFDVGFNSLNGSFPSSLQSWTDLTTLILRENRFTGSILTVLSEFNKLHDLQLGGNLFGGKIPPSLGKLKNLIYGLNLSANGLTGEIPFEIGKLKVLSSLDLSSNNLTRSMDVLGELSLDNLNISYNFLHGPVSKTLMNFLNSSPSSFLENPYLCVSFSASHRSNRTKACYLKPSVYKSTYHLGISISAMVMIELGSTILVSGMLIALVFCRLNAYDSMLSHGENKKEDINLGLPWNCGMLKDAMIKVDDGCIVGRGAYAIVYKVHNQGLVLTVQKSVFRGKDNKRLGIMKREIKTLYMIKHRNLVRILGYSVAKDYGVMFTHYMENGSLHDILHRNILSPPLIWNVRLKIADGIAQGLKYLHYDCDLPIVHRDIKAQNILLDVEMEPHISNFGTANIRNLTEDSYTHSNLPWQKLSARIAGTAGYMAPGN* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1956 525 Gene3D Transferase(Phosphotransferase) domain 1 336 525 - -
Ahy20g1956 525 Gene3D Ribonuclease Inhibitor 1 259 IPR032675 -
Ahy20g1956 525 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 2 524 - -
Ahy20g1956 525 ProSiteProfiles Protein kinase domain profile. 342 525 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy20g1956 525 SUPERFAMILY L domain-like 2 249 - -
Ahy20g1956 525 SMART serkin_6 342 525 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy20g1956 525 SUPERFAMILY Protein kinase-like (PK-like) 344 523 IPR011009 -
Ahy20g1956 525 Pfam Protein kinase domain 347 523 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy20g1956 525 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672|GO:0006468
Ahy20g1956 525 PANTHER OS08G0446200 PROTEIN 2 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1956 Ahy-Chr20 109853107 109854684 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1956 2 525 Receptor kinase-like Gene Family AT1G73080 44.403 3.00e-119 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Ahy20g1956 Pkinase 3.30E-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1956 - - ahf:112786140 1026.54