Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1949 ATGGAGTTCGACGAGTATGACTACTTGGAGAAGACGGTGGAGGACCATGACGACAGAGATTCGTCTAAGAAGACCAAGAAAGACAGCTCCGAGAAAACCTACCGGAAGCGCGACGAGCTCGACGACGATCTAGACGCTGCCGCCTACGACGGGCGCATCAAGAAGTCCAGGGCCGACGAAGAGAACGGCTCCAAGAAGGATCGGGATGGCCGCGATAGGGAGCGGTCCTCCCGCGACAAGGACCGCCACAGGCACCGCAGCAGCGACAGGGAAATAGACGGTGAGCGGAGCAGCAGAGACAGAGATAGAGACAGTGAGAGGAGCAGCAGGGACAGAGAGAAGGAGAGGGAGAAAAGCAAAGAGAGGGATAGGAGGGAGAGGGACAAAGAGAGGGAGAAGAGAGAAAGGGACAGAGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAAAGGGAAAGAGAGAGAAAGGAGAGGGAGAGGGACAGAGAACGAGAGGAGGGGTCCAGGAGGAGCAGGTCTCGTTCCGAGCGAGACAGAGACAGAGACAGAGAGCGTGATTTTGACTCGAGAGATGGCCGGAGACAAAGGGAAAAGAAAGAAGCTGCAGAGCCTGAGGCAGATCCCGAAAGGGATCAGCGAACTGTTTTTGCCTACCAGATGCCTTTGAAGGCAACAGAGAGGGATGTTTATGAGTTCTTCTCTAAAGCTGGCAAGGTGAGGGATGTTCGTCTTATCATGGATAGGAACTCAAGAAGATCTAAAGGAGTTGGGTATATTGAATTTTATGATGTGATGTCAGTGCCAATGGCAATTGCTCTCTCTGGCCAACTTCTCCTTGGACAGCCTGTGATGGTTAAACCTTCTGAGGCTGAAAAGAACCTTGTTCAATCTAATACTACTAGTGGAGCTGCTGGTGTAGCAGGACCATATGGAGCTGTAGACAGGAAACTGTATGTAGGGAACCTTCACTTCAACATGACCGAGAGTCAACTGAGAGAGATTTTTGAGCCATTTGGTCCAGTGGAGCTTGTACAATTGCCACTTGATCTGGAAACTGGACATTGCAAGGGTTTTGGGTTTGTTCAATTTGCTCATCTTGAGCATTCCAAGGCAGCTCTGAGTTTAAATGGAAAACTGGAAATTGCTGGCAGGACTATCAAGGTCTCATCTGTAACTGATCATGTTGGAAGCCAAGATACAACTGCGAAATCTGCAGACTTTGATGATGATGAAGGTGGATTGGCTTTAAACGCTCAATCAAGAGCTTTACTTATGCAGAAGCTGGATCGCTCTGGCATTGCTGCTAGCATTGGCGTTCCACCAGTTGTGAATGGGTCGGCCCCTGCACATCAAGCTGTTAGCTTGCCTATTGGTAATCCAGGCATAATACCAGCACCAACTCTCCCAACACAACTTATGACTAACCCAGTTGCCGAGCCGGTTGGAACCCCCAGCGAGTGTTTACTGTTGAAGAATATGTTTGATCCGGCCACTGAGACAGAACCAGATTTTGATTTAGACATTAAAGAGGATGTAGAAGAAGAGTGTTCTAAGTATGGGCGGGTGAAGCATATCTCTGTTGACAAAAACAGTGCAGGTTTTGTGTATTTGCAGTTTGAAACAGTGGAAGCAGCAAGTGCCGCTCAACGTGCATTGCACCTGAGGTGGTTTGCACGTAGATTGATTTCAGCTTTGTTCATGCAACCTCAGATGTATGAAGAGAAGTTTAAAGGGGAGGTTTGA 1752 0.4886 MEFDEYDYLEKTVEDHDDRDSSKKTKKDSSEKTYRKRDELDDDLDAAAYDGRIKKSRADEENGSKKDRDGRDRERSSRDKDRHRHRSSDREIDGERSSRDRDRDSERSSRDREKEREKSKERDRRERDKEREKRERDREKEKEKEKEKEKEKERERERKERERDREREEGSRRSRSRSERDRDRDRERDFDSRDGRRQREKKEAAEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTSGAAGVAGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVELVQLPLDLETGHCKGFGFVQFAHLEHSKAALSLNGKLEIAGRTIKVSSVTDHVGSQDTTAKSADFDDDEGGLALNAQSRALLMQKLDRSGIAASIGVPPVVNGSAPAHQAVSLPIGNPGIIPAPTLPTQLMTNPVAEPVGTPSECLLLKNMFDPATETEPDFDLDIKEDVEEECSKYGRVKHISVDKNSAGFVYLQFETVEAASAAQRALHLRWFARRLISALFMQPQMYEEKFKGEV* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1949 583 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 136 583 - -
Ahy20g1949 583 SUPERFAMILY RNA-binding domain, RBD 484 571 IPR035979 GO:0003676
Ahy20g1949 583 MobiDBLite consensus disorder prediction 1 217 - -
Ahy20g1949 583 MobiDBLite consensus disorder prediction 9 215 - -
Ahy20g1949 583 CDD RRM1_RBM39_like 217 289 - -
Ahy20g1949 583 Gene3D - 484 582 IPR012677 -
Ahy20g1949 583 TIGRFAM SF-CC1: splicing factor, CC1-like family 109 579 IPR006509 GO:0003723|GO:0005634|GO:0006397
Ahy20g1949 583 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 145 - -
Ahy20g1949 583 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 512 564 IPR000504 GO:0003723
Ahy20g1949 583 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 223 285 IPR000504 GO:0003723
Ahy20g1949 583 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 320 390 IPR000504 GO:0003723
Ahy20g1949 583 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 411 507 IPR029123 -
Ahy20g1949 583 PANTHER CC1-LIKE SPLICING FACTOR 1 145 - -
Ahy20g1949 583 CDD RRM2_RBM23_RBM39 320 392 - -
Ahy20g1949 583 SUPERFAMILY RNA-binding domain, RBD 157 291 IPR035979 GO:0003676
Ahy20g1949 583 SMART rrm1_1 217 289 IPR000504 GO:0003723
Ahy20g1949 583 SMART rrm1_1 490 567 IPR000504 GO:0003723
Ahy20g1949 583 SMART rrm1_1 319 392 IPR000504 GO:0003723
Ahy20g1949 583 CDD RRM3_RBM39_like 488 570 - -
Ahy20g1949 583 Gene3D - 186 315 IPR012677 -
Ahy20g1949 583 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 216 293 IPR000504 GO:0003723
Ahy20g1949 583 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 318 396 IPR000504 GO:0003723
Ahy20g1949 583 Coils Coil 120 169 - -
Ahy20g1949 583 PANTHER CC1-LIKE SPLICING FACTOR 136 583 - -
Ahy20g1949 583 SUPERFAMILY RNA-binding domain, RBD 317 395 IPR035979 GO:0003676
Ahy20g1949 583 Gene3D - 316 410 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1949 Ahy-Chr20 109075421 109081017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1949 215 382 Eukaryotic Initiation Factors Gene Family AT1G49760 30.814 5.43e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1949 K13091 - gmx:100802446 679.478