Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1942 ATGTGTATTGAAAAGGTGGCGAATCCTCAAGAGAAAGGAAACAAGGTTGTTGAGAAGAGGGAATTGGAACTTGATGAGAGGATAAACAACAACAATTCTACATTGTCATCATCAATGCATATGATATTCCCGGGTTTGAATAGGGAGGAGGAGATGTCTGCCATGGTTTCGGCTTTGACCCATGTTGTCTCTGGTGAAGTTCCAACCGGTGCAGATGACGATTATTCACTTCCAACAAGTAACATGGCTTATGGTTCTTCAACATTTTCTAATTATGTTGTTGGAAGTGGCTCTTCTTCTATCAAGAGAACTAGGCAGCAAGATGATATATCCTTTGTTGACCACTTCTCTTCATCACATGGTGTAGCTTCTTCATCCCCTACTACAACAATGAATAGAGAATGTTCAAGAGAAAATGGAAGTGGGAGTGGAGAGATGGGAGGAGGAAACAGGGGAAGGGCAGTGTATGAATACAGAGCAAGAGAAGAGAACGTGAGAGAGGAAGAGCCAAGAAGGAAATACAGAGGCGTCAGGCAGAGGCCATGGGGCAAGTGGGCAGCCGAGATCAGAGACCCATTCAAAGCCGCCAGAGTCTGGTTAGGCACCTTCGACACTGCCGAGGCTGCCGCCAGAGCCTACGACCAAGCCGCCCTCCGTTTCCGGGGCAACAAGGCCAAACTCAACTTCCCCGAAAATGTCACGCTCCTCCGCCACGCGCCACCGCAAATCACTACTTCTTCGCTCGTGGCTATTCCAACTTCCACTGAGGCCATTGTTCACAGTGAGCCTCTTATTAGCACTACTTTGCATGGTTCTTCTTCTTCCGCGGGTTTGTATGGGAATTTCCCCACCATGGATTCCACTATGACGGTTATGGCGTCAAGTGTGGCTTCTCATCTTCGACATTCTTCTCCGTCGTCAACGCAAGCTTCGCCGCCGTTCTTGTCTTCGTCTTCTGCGTTCGGTTCCACTACGCAGTTGCCGGCGGCGTGGTCATCAGCTTCCGGTAACAGCTCTTCTTCGTCGGGATAG 1032 0.4913 MCIEKVANPQEKGNKVVEKRELELDERINNNNSTLSSSMHMIFPGLNREEEMSAMVSALTHVVSGEVPTGADDDYSLPTSNMAYGSSTFSNYVVGSGSSSIKRTRQQDDISFVDHFSSSHGVASSSPTTTMNRECSRENGSGSGEMGGGNRGRAVYEYRAREENVREEEPRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEAAARAYDQAALRFRGNKAKLNFPENVTLLRHAPPQITTSSLVAIPTSTEAIVHSEPLISTTLHGSSSSAGLYGNFPTMDSTMTVMASSVASHLRHSSPSSTQASPPFLSSSSAFGSTTQLPAAWSSASGNSSSSSG* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1942 343 PANTHER DNA-BINDING DOMAIN 47 339 IPR044808 GO:0003700|GO:0009873
Ahy20g1942 343 MobiDBLite consensus disorder prediction 117 152 - -
Ahy20g1942 343 MobiDBLite consensus disorder prediction 302 322 - -
Ahy20g1942 343 PRINTS Ethylene responsive element binding protein signature 196 212 IPR001471 GO:0003700|GO:0006355
Ahy20g1942 343 PRINTS Ethylene responsive element binding protein signature 174 185 IPR001471 GO:0003700|GO:0006355
Ahy20g1942 343 MobiDBLite consensus disorder prediction 117 139 - -
Ahy20g1942 343 ProSiteProfiles AP2/ERF domain profile. 173 230 IPR001471 GO:0003700|GO:0006355
Ahy20g1942 343 CDD AP2 173 232 IPR001471 GO:0003700|GO:0006355
Ahy20g1942 343 SUPERFAMILY DNA-binding domain 173 231 IPR016177 GO:0003677
Ahy20g1942 343 Pfam AP2 domain 173 222 IPR001471 GO:0003700|GO:0006355
Ahy20g1942 343 Gene3D AP2/ERF domain 172 232 IPR036955 GO:0003700|GO:0006355
Ahy20g1942 343 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 47 339 - -
Ahy20g1942 343 SMART rav1_2 173 236 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1942 Ahy-Chr20 108396931 108398872 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1942 1 267 AP2-EREBP Transcription Factor Family AT5G64750 39.228 2.97e-37 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy20g1942 AP2 3.70E-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1942 - - aip:107621817 588.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1942 20 108396931 108398872 Ahy10g1516 10 87632600 87634983 hybridization