Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1918 ATGGAGTTGGCCGCCAAGCTCCACCACCTCGATCTCACTTCTGCCTTTCTCAGCGGTGGCTCCGTTATCTTCGAACCTCCTAAACCTCTCTCCCGCCCACCCCTTCATCTTCGCCCAGTTCGCATCAACAACGCTCACTTCACTAACCCAACAACAACAAGAAGAAGAAGATTCTTCGACGCCATAAGACCTACCAATTCCACTACCACTCTCCGTTTCTCCGCCGTGGCCACCGACGACACCTCCCTCGCCGAAACGACGATCGAACAACAAGACGACATCGAGTCCCTCCTCTCCGAACCTTCTTCCAACGACTATGACTTCGATAAACGGCGCGCCAACAAGCAATCCACTACGGGAGCTTCCAGCGTTTCTTCGGGGGTAAAATTGGAAAACGTTACCAAGAGCTACAAGGGTGTAACGGTTTTGAAAGACGTGAGCTGGGAAGTGAAGAAGGGAGAGAAAGTGGGCCTCGTTGGCGTTAACGGTGCCGGTAAAACCACGCAGATGAGGATTATTGCGGGTCAAGAAGAACCCGATTCAGGTAACGTCATTAAAGCCAAACCGAACATGAAAATCGCATTTTTGAGCCAGGAATTCGAGGTTTCGCCCAGTAAGACGGTGAGGGAAGAGTTCACGAGCGCGTTCAAGGAGGAGATGGAGATAGCGGTGAAGCTTGACAAGGTTCAGAAGGCTCTAGAAGGTGCCGTGAATGACATGGATTTGATGGGGAGGCTTCTTGATGAGTTTGATTTGCTTCAGAGAAAGGCACAGGCTTTGGATTTGGATGAGGTTGATGCCAAGATAAGTAAGTTGATGCCTGAGCTTGGGTTTGCAGCTGAAGATTCTGATAGGTTGGTTGCTTCTTTTAGCAGTGGGTGGCAGATGAGAATGTCTCTTGGGAAAATTTTACTTCAGGAGCCAGATTTGTTGTTGTTGGATGAGCCGACGAATCACCTTGACCTTGATACCATTGAGTGGCTCGAAGAGTATCTTAACAAGCAGGATGTCCCCATGGTTATCATTTCCCATGACAGAGCATTTCTTGATCAGCTGTGCACAAAAATTGTGGAAACTGACATGGGTGTATCCAGGACATTTGAGGGGAATTATTCTCAGTTTATACTTTCAAAGGCAGCATGGATTGAGGCACAGTACGCCGCATGGGAAAAGCAGAAGAAAGAAATTGAGCTGACCAAAGATTTAATTAGTAGGTTAGGTGCTGGAGCAAATTCCGGCCGTGCTTCATCTGCCGAGAAGAAGCTGGAGAGACTTCAGGATGAGGAACTAGTAGAGAAGCCATTTGAACGGAAACAAATGAAAATCAGGTTCCCTGAGCGCGGAAGGAGTGGAAGATCTGTTGTAACAATTAAGAACTTGGAGTTTGCCTTTGAGGATAAGACACTTTTCAAGAAGGCAAATCTTACAATTGAAAGGGGAGAAAAGATTGCAATTATTGGTCCAAATGGATGTGGCAAGAGTACTTTATTGAAATTGATAATGGGTATAGAGAAGCCGATGGGGGGTGAGGTTGTGCTTGGGGAGCATAATGTATTACCTAACTATTTTGAGCAAAATCAGGCTGAGGCACTGGATCTGGACAAGACAGTGCTTCAGACGGTAGAAGAAGCTGCAGAGGACTGGAAGATTGATGATATCAAAGGACTTCTTGGCCGATGTAATTTTAAAGCTGATATGCTTGACCGAAAAGTTTCCCTATTGAGTGGTGGTGAGAAGGCACGGTTGGCTTTTTGCAAATTCATGGTAAAGCCATCAACTCTACTTGTGTTGGATGAACCAACCAATCACTTGGATATACCTTCTAAAGAAATGCTCGAGGAAGCAATAAATGAGTACGAGGGCACTGTTATCACTGTGTCTCATGATCGATACTTTATAAAACAAATAGTTAATAGAGTTATAGAAGTTAAAGATGGCACCTTACAGGATTATGCAGGCGATTACAATTATTATTTAGAGAAGAACCTTGACGCCAGGGAGAGAGAGCTCGAACGGGAAGCAGAGCTTGAGGACAAAGCTCCTAAGGTGAAAGCCAAGTCTAAGATGTCTAAGGCTGAGAAAGAAGCACGGAAGAAACAAAAGATGCAAGCCTTTCAGGCAGCAAAACAGAAGTCTAAAAGCGCCAAGAATGCCAAGAGGTGGAAGTGA 2169 0.4578 MELAAKLHHLDLTSAFLSGGSVIFEPPKPLSRPPLHLRPVRINNAHFTNPTTTRRRRFFDAIRPTNSTTTLRFSAVATDDTSLAETTIEQQDDIESLLSEPSSNDYDFDKRRANKQSTTGASSVSSGVKLENVTKSYKGVTVLKDVSWEVKKGEKVGLVGVNGAGKTTQMRIIAGQEEPDSGNVIKAKPNMKIAFLSQEFEVSPSKTVREEFTSAFKEEMEIAVKLDKVQKALEGAVNDMDLMGRLLDEFDLLQRKAQALDLDEVDAKISKLMPELGFAAEDSDRLVASFSSGWQMRMSLGKILLQEPDLLLLDEPTNHLDLDTIEWLEEYLNKQDVPMVIISHDRAFLDQLCTKIVETDMGVSRTFEGNYSQFILSKAAWIEAQYAAWEKQKKEIELTKDLISRLGAGANSGRASSAEKKLERLQDEELVEKPFERKQMKIRFPERGRSGRSVVTIKNLEFAFEDKTLFKKANLTIERGEKIAIIGPNGCGKSTLLKLIMGIEKPMGGEVVLGEHNVLPNYFEQNQAEALDLDKTVLQTVEEAAEDWKIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAINEYEGTVITVSHDRYFIKQIVNRVIEVKDGTLQDYAGDYNYYLEKNLDARERELEREAELEDKAPKVKAKSKMSKAEKEARKKQKMQAFQAAKQKSKSAKNAKRWK* 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1918 722 SMART AAA_5 479 647 IPR003593 -
Ahy20g1918 722 SMART AAA_5 152 367 IPR003593 -
Ahy20g1918 722 Pfam ABC transporter 143 318 IPR003439 GO:0005524
Ahy20g1918 722 ProSitePatterns ABC transporters family signature. 290 304 IPR017871 GO:0005524
Ahy20g1918 722 Coils Coil 682 711 - -
Ahy20g1918 722 Gene3D - 417 684 IPR027417 -
Ahy20g1918 722 Gene3D - 124 409 IPR027417 -
Ahy20g1918 722 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 455 670 IPR003439 GO:0005524
Ahy20g1918 722 CDD ABCF_EF-3 128 358 - -
Ahy20g1918 722 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 61 712 - -
Ahy20g1918 722 MobiDBLite consensus disorder prediction 672 702 - -
Ahy20g1918 722 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 128 386 IPR003439 GO:0005524
Ahy20g1918 722 Coils Coil 722 722 - -
Ahy20g1918 722 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 129 363 IPR027417 -
Ahy20g1918 722 PANTHER ABC TRANSPORTER F FAMILY MEMBER 5 61 712 - -
Ahy20g1918 722 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 434 660 IPR027417 -
Ahy20g1918 722 MobiDBLite consensus disorder prediction 94 125 - -
Ahy20g1918 722 MobiDBLite consensus disorder prediction 672 722 - -
Ahy20g1918 722 Pfam ABC transporter 357 444 IPR032781 -
Ahy20g1918 722 Pfam ABC transporter 471 602 IPR003439 GO:0005524
Ahy20g1918 722 ProSitePatterns ABC transporters family signature. 574 588 IPR017871 GO:0005524
Ahy20g1918 722 CDD ABCF_EF-3 455 647 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1918 Ahy-Chr20 106870822 106875006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1918 452 672 Calmodulin-binding Proteins AT2G36910 25.101 8.36e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1918 - - adu:107470294 1303.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1918 20 106870822 106875006 Ahy10g1497 10 85552766 85556951 hybridization