Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1916 ATGGCGCCGAAGCAGAGAGCAGCAAGGAAGGTCGGCAGGAACCCTGAACTGGTGCGGGGGATCGGGAAGTACTCTCGGTCTCAGATGTACCACAAGAGGGGTTTGTGGGCCATAAAGGCTAAGAACGGTGGCAAGTTCCCCGTCCATGAACCCAAGCCTAAGCCCCAGGCCCTTGCTCAAAAACCCCCTAAGTTCTATCCTGCTGAAGATGTCAAGACTCCTCTTGTCAACAAGCACAAACCCAAACCCACCAAACTCAGGGCTAGCATTACTCCTGGGACAGTGTTGATTCTTCTTGCTGGAAGATTCAAGGGGAAGAGAGTTGTGTTCCTCAAGCAGCTTCCTTCTGGGCTGCTTCTTGTGTCTGGACCCTTCAAGATTAATGGAGTTCCGTTGAGACGTGTGAATCAGTCGTATGTTATTGCCACATCAACCAAAGTAGATGTGTCTGCTTGTAACGTGGAGAAATTCGATGACAAATACTTTTCAAAGGAAGTCCAGAAAAAGAAAAAGAAGGGAGAAGGCGAGTTCTTTGAGTCCGAGAAGGAGGAGAAGAAGACCCTCCCTCAAGACAAGAAGGATGACCAGAAGACTGTTGATTCTGCTTTGATAAAAGCCATCGAGAGTGTTCCAGACTTGAAGTTTTACCTTGGTGCTAGGTTTTCTTTGAAGCAAGGCCAGAAGCCTCATGAATTAGTCTTCTAG 705 0.4809 MAPKQRAARKVGRNPELVRGIGKYSRSQMYHKRGLWAIKAKNGGKFPVHEPKPKPQALAQKPPKFYPAEDVKTPLVNKHKPKPTKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIATSTKVDVSACNVEKFDDKYFSKEVQKKKKKGEGEFFESEKEEKKTLPQDKKDDQKTVDSALIKAIESVPDLKFYLGARFSLKQGQKPHELVF* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1916 234 PANTHER 60S RIBOSOMAL PROTEIN L6 1 234 - -
Ahy20g1916 234 MobiDBLite consensus disorder prediction 173 197 - -
Ahy20g1916 234 Pfam Ribosomal protein L6e 127 234 IPR000915 GO:0003735|GO:0005840|GO:0006412
Ahy20g1916 234 PANTHER 60S RIBOSOMAL PROTEIN L6 1 234 IPR000915 GO:0003735|GO:0005840|GO:0006412
Ahy20g1916 234 Pfam Ribosomal protein L6, N-terminal domain 5 62 IPR005568 GO:0003735|GO:0005840|GO:0006412
Ahy20g1916 234 Gene3D - 88 172 IPR014722 -
Ahy20g1916 234 ProSitePatterns Ribosomal protein L6e signature. 128 146 IPR000915 GO:0003735|GO:0005840|GO:0006412
Ahy20g1916 234 SUPERFAMILY Translation proteins SH3-like domain 88 178 IPR008991 -
Ahy20g1916 234 CDD KOW_RPL6 82 234 IPR041997 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1916 Ahy-Chr20 106773087 106774856 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1916 1 234 Cytoplasmic Ribosomal Protein Gene Family AT1G74060 78.205 6.98e-116 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1916 K02934 - gmx:100499766 370.548