Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1896 ATGATGGAAACACTTCCTTCAGTACCAGGATCTCCTTTGTTGAACACACAAGTACTTAGGAGGTACAAATCGCCATGCACTTTTGTGGTTCCTAACTACTCTCTTAGATTCACTCGGATATGCTGCAAGAAGCTATCAGAAAATGGCATTGATGAGAAGCACAAACCCTCCACCAGCAATACCACTGCCTCTAAATCCAAGGACAGAATGGAAGATTACAATATTGCTATGAAGAGAATGATGAGGAATCCTTATGAGTATCACCACGATCTGGGTATGAATTACACACTTATAACTGACAATCTCATTGTGGGATCCCAACCACAGAAACCGGAAGACATCGATCACCTCAAGAAGGAAGAGGGTGTGACATACATTCTGAACTTGCAGCAGGATAAGGATGTAGAATATTGGGGAATAGACTTGAAGTCGATAACAAGGAGGTGTCATGAACTCGATGTTCGACATATGAGGAGGCCGGCAATTGACTTTGATCCAAACTCCTTGCGAAATGTTCTACCTAAAGCAGTCTCATCATTGGAATGGGCAATCTCAGAGGGAAAAGGAAGAGTTTATGTGCATTGTACTGCTGGACTTGGGAGAGCACCAGGGGTGGCAATAGCTTATCTGTTCTGGTTCTATGACATGAATGGTTGGTTCAAGATGCAATCACGTCATGATGATGCTCGAAACTGGGAATACATCCAACTTCCAAGCACATTCATAGGCATATATAACTTGTATAGTATGGAATGA 756 0.4246 MMETLPSVPGSPLLNTQVLRRYKSPCTFVVPNYSLRFTRICCKKLSENGIDEKHKPSTSNTTASKSKDRMEDYNIAMKRMMRNPYEYHHDLGMNYTLITDNLIVGSQPQKPEDIDHLKKEEGVTYILNLQQDKDVEYWGIDLKSITRRCHELDVRHMRRPAIDFDPNSLRNVLPKAVSSLEWAISEGKGRVYVHCTAGLGRAPGVAIAYLFWFYDMNGWFKMQSRHDDARNWEYIQLPSTFIGIYNLYSME* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1896 251 CDD DSP_laforin-like 93 217 IPR045204 GO:0019203|GO:0046838
Ahy20g1896 251 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF2, CHLOROPLASTIC 18 217 - -
Ahy20g1896 251 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 170 210 IPR000387 GO:0016311|GO:0016791
Ahy20g1896 251 Pfam Dual specificity phosphatase, catalytic domain 115 212 IPR000340 GO:0008138|GO:0016311
Ahy20g1896 251 ProSiteProfiles Dual specificity protein phosphatase domain profile. 94 251 IPR020422 GO:0006470|GO:0008138
Ahy20g1896 251 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 18 217 - -
Ahy20g1896 251 Gene3D Protein tyrosine phosphatase superfamily 77 221 IPR029021 -
Ahy20g1896 251 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 91 217 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1896 Ahy-Chr20 105187576 105189842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1896 23 217 Protein tyrosine phosphatase (PTP) family AT3G10940 69.307 3.87e-96 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1896 - - gmx:100787079 323.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1896 20 105187576 105189842 Ahy20g1896 20 105187576 105189842 ECH
Ahy20g1896 20 105187576 105189842 Ahy10g1473 10 83571764 83573872 hybridization