Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1872 ATGCATATAATGGCTCTTCACCATCCACACCGTTTATTACTAGACACAAGTTCAAGCTCTGGTGATGTAAATAGGACAAAAGATTCCTCCTTAGGCGACCCGAATTTCGACACCAACATGGTGATTATCTTGGCTGCTTTGCTCTGTGCACTCATATGTGCTTTGGGACTCAACTCAATAGTGCGTTGCGCTCTAAGATGTAGCCGAAGGTTGGCTTTCGAGACCCCGGACGAAGCAGCAGCGCGATTAGCGGTTAAAGGGCTGAAGAAGAGTGCTCTGCATCAGATTCCTATAGTTGTTTATGGTAATTCAGGTGCTACTAATAGTTGTATTAAAGCCACTGATTGTGCAATTTGCCTAGGGGAGTTTATGAATGGGGAAAAAGTTAGAGTGCTACCAAAATGTAACCATGGATTCCATGTTAAGTGTATAGATACATGGCTGCAATCACACTCCTCTTGCCCAACTTGTAGAAGGTGTTTGATTGAGCAACCAGCAACAAGTTCTGAAGTTGCAACTGTGGCTGTTGCTGTGGCTGCAGCTTCAGGAACAAGGAATAGTCATGCAGATAATAATGCTTCAGGAGGGTATCAACCTGATCATGTAGCTGTAGTTGTTGATGAGATTGGCTAG 633 0.4408 MHIMALHHPHRLLLDTSSSSGDVNRTKDSSLGDPNFDTNMVIILAALLCALICALGLNSIVRCALRCSRRLAFETPDEAAARLAVKGLKKSALHQIPIVVYGNSGATNSCIKATDCAICLGEFMNGEKVRVLPKCNHGFHVKCIDTWLQSHSSCPTCRRCLIEQPATSSEVATVAVAVAAASGTRNSHADNNASGGYQPDHVAVVVDEIG* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1872 210 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 162 IPR013083 -
Ahy20g1872 210 Pfam Ring finger domain 115 158 IPR001841 -
Ahy20g1872 210 PANTHER RING-H2 FINGER PROTEIN ATL74 10 177 - -
Ahy20g1872 210 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 10 177 - -
Ahy20g1872 210 SUPERFAMILY RING/U-box 115 165 - -
Ahy20g1872 210 SMART ring_2 116 157 IPR001841 -
Ahy20g1872 210 CDD RING-H2_PA-TM-RING 115 158 - -
Ahy20g1872 210 ProSiteProfiles Zinc finger RING-type profile. 116 158 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1872 Ahy-Chr20 103600338 103602320 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1872 11 166 C3H Transcription Factor Family AT3G10910 57.143 2.15e-55 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1872 - K19040 gmx:100787273 249.98