Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1866 ATGAGTAGTATTGTAATCTGCGGTAGTGAGGGTAATATTGGTTTTTCAGAGAAGAGGGAGAGGCTTATGAATAAGCTTGTGGAGGGGCATAAACATGCCACTGAGCTGAAGCTTCTCCTTCAGAATCAGAATCAGAATCCTCCGGCCACTATTCATCACGGCGGCGGTTCATCAGCTGAGGCGCTATTAATAACCAAGATTCTCAGATCTTTCGCGGAGACTCTCTCCGTTCTAGATTCTCCTTCTTCTTCTGCTTCCTTCTTCCTTAACGAGAATAACAGTGGGTCCCAGCTTGTTATTGCTGCAAACTCCACCAATAATGATCTGAGGTCTGAAGAAGGTTCCAGTGAGAGTAGCAAAAGATTCTCTTCATCAGTCCCTAAGGATCGAAGAGGCACATACAAAAGAAGGAAAACGGAAGAGACATGGAGCAATGTATCTCCCACCACTGAGGATAATCTTGCCTGGAGAAAGTATGGACAGAAGGACATACTCAATTCTAAATTCCCCAGGAGTTATTATAGGTGCACTCGGAAGTATGATCAAGGTTGCAAAGCAACAAAACAAGTTCAAAGGATTCAAGATAATCCAGTTTTGTATCAAATTACGTACATTGGTCGTCATACTTGCAAAGAAACTCTCAAAGCTCCACAAATGACAGCATATCTTTTGAATCCACAAGACCATCATCAAACCCCACCAACAAATGCTATAATCAAACAAGAATATCCCAAACAAGAGGACACTCCGAGTGGTGAAATAATCATTGCAGAAAAATTGGATGCAAACCTTTGGTCTGAGTTGAAGGATATCGAGATAACCAACCCTCCTACTTATGCTAACTTTAGCGCATTTTCTTATCATTTTTGCACCACCGGGTTCCACTTTGATGATCATCATCATGGTGAAAGTCATATGCTATAA 924 0.4167 MSSIVICGSEGNIGFSEKRERLMNKLVEGHKHATELKLLLQNQNQNPPATIHHGGGSSAEALLITKILRSFAETLSVLDSPSSSASFFLNENNSGSQLVIAANSTNNDLRSEEGSSESSKRFSSSVPKDRRGTYKRRKTEETWSNVSPTTEDNLAWRKYGQKDILNSKFPRSYYRCTRKYDQGCKATKQVQRIQDNPVLYQITYIGRHTCKETLKAPQMTAYLLNPQDHHQTPPTNAIIKQEYPKQEDTPSGEIIIAEKLDANLWSELKDIEITNPPTYANFSAFSYHFCTTGFHFDDHHHGESHML* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1866 307 PANTHER WRKY DNA-BINDING TRANSCRIPTION FACTOR 70 16 275 - -
Ahy20g1866 307 SUPERFAMILY WRKY DNA-binding domain 148 211 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ahy20g1866 307 Gene3D WRKY domain 136 213 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ahy20g1866 307 SMART WRKY_cls 150 212 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ahy20g1866 307 MobiDBLite consensus disorder prediction 106 143 - -
Ahy20g1866 307 ProSiteProfiles WRKY domain profile. 145 208 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ahy20g1866 307 MobiDBLite consensus disorder prediction 113 142 - -
Ahy20g1866 307 Pfam WRKY DNA -binding domain 151 211 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ahy20g1866 307 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 16 275 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1866 Ahy-Chr20 102637357 102640152 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1866 18 242 WRKY Transcription Factor Family AT3G56400 42.308 1.11e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ahy20g1866 WRKY 3.40E-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1866 - - adu:107470163 578.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g1635 17 34852910 34858489 Ahy20g1866 20 102637357 102640152 ECH
Ahy20g1866 20 102637357 102640152 Ahy20g1866 20 102637357 102640152 ECH
Ahy17g3052 17 131669642 131674076 Ahy20g1866 20 102637357 102640152 PCT