Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1852 ATGTATACAAGCGAAAGGCAGTTATCACGCCTAAGAATAGCATATCTAAAAGCAGTTCTTAGCCAAGAGATAGGAGCATTTGATACAGAACTAACAAGTGGAAAAGTCATTAGTGGAATAAGCAAACACATGAGTGTCATACAAGATGCCATTGGTGAGAAGTTGGGTCACTTTACCTCAAGCTGTTCAACATTCTTTTCCGGAATTGTGATTGCTGCCATATGCTGTTGGGAAGTGTCACTCTTGTGTTTAGTGGTTGTACCCCTTATTCTTATGATTGGAGCAACTTACACCAAGAAAATGAACACCATTTCAACGACCAAAATGTTTTTCCATTCTGAAGCTACAGCTATGATAGAGCAGACAATATCACACATAAAAACAGTATATGCTTTTGTGGGAGAGAGTTCTGCAATCAAATCCTTCAGAGAGAATATGGAGAAACAGTTCCAAATAAGCAAAGGGGAGGCGCTTGTGAAGGGAGTTGGAACAGGGATGTTTCAAACCGTAAGTTTCTGTTCCTGGGCTCTCATTGTATGGGTTGGAGCCGTTGTCGTGACAGCCGGTAGAGCGAAGGGAGGAAACATTATAGCTGCAGTGATGAGCATCCTCTTTGGTGCCATATCCATCACTTACGCGGCACCAGACATGCAAATATTCAACCAGGCAAAAGCAGCAGGATATGAAGTTTTCCAAGTGATACAAAGAAAGCCTTTAATAAGCAACGAAGCACAAGGGAGGAAGGTTACCGAGATCACAGGCGACATTGAGCTGAGGGATGTATACTTTACCTACCCATCTCGACCGGAGAAACCTATCCTTCAAGGACTATCCTTGTCAATTCCAGCAGGAAGGACAGTAGCTCTAGTTGGTAGCAGTGGTTGCGGAAAAAGCACTGTTATTTCCCTGGTTAACAGATTCTATGACCCTGCTAGAGGAGAAGTTTTTATTGATGGTCACAATATCAAGGATCTTGATCTGAAGTTCCTTCGGAGTAATATAGGGCTCGTTTCCCAAGAACCGTCACTGTTTGCAGGCACCATCAAGGATAACTTGAAAGTGGGGAAAATGGATGCAGATGATCAAGAGATACAGAAGGCAGCTGAAATGTCAAATGCACACACTTTTGTATCACAGCTGCCGAATCAGTACTTAACAGAGGTAGGACAAAGGGGAGTTCAATTATCAGGAGGCCAGAAACAGAGAATTGCAATAGCAAGAGCCATTCTTAAGAATCCTCCCATCCTTTTGCTTGATGAGGCAACTAGCGCCCTTGACACCGAGTCAGAAAAGCTGGTTCAAGAAGCACTTGAAACAGCCATGCAGGGAAGGACTGTCATCTTGATTGCACACAGACTCTCAACAGTTGTAAACGCAGATATGATTGCTGTAGTAGAGAACGGACAAGTTGTAGAAACAGGCACACACCAGAATTTGCTCGACAAAAGCGATTTCTATAGGGCATTATATAGCATGCAGAACCTTGAAGCAGCTCCTGAATCCAGCACCACAATTTCCAAAAGTAAGAGTACCCACCAAGGAGATTCTACTGATGAAGCTAAACTCTCGGAGAAGCAAAAAGAGACTCAAATAAATCCCATGGAGGATTCTGAGCTAAAGGGACAGGAGACAAGAAAAAGAAATATATTTTTCAGAATCTGGTTTGGTCTGAAACCGAGGGAGCTGGCAAAGATTGCTTTTGGCTCAGCCGCAGCAGCTTTCTCTGGTGTGTCGAAGCCAGTTTTCGGGTACTGCATCATCACTATTGGAGTTGCATACTTCGATCCCGATGCAAAAAGGAAGGTTGGCTATTATTCAGCCTTCTTCTCTGCAATAGGGTTGCTTTCATTACTCAGTAACACAATCCAGCATTACTTCTATGGAGTAGTCGGAGAAAAGGCCATGGAGAATTTCAGACATGCTCTATATAAAGGTGTGCTCCGTAACGAAGTAGGCTGGTTTGATAGATCTGATAACACGGTTGGTTCATTAACTTCGCGAATCATCAGTGACACTGCCCTGGTCAAAATCATAATTGCTGATCGGATGGCTGTGATTGTGCAATGCATTTCCTCCATATTGATAGCAACAGGTGTGAGCATGTATGTCGACTGGAGAATGGCTTTGGTAGCTTGGGCTGTGATGCCTTGCCACTTCATAGGCGGTCTCATTCAAGCAAAGTCTGCCAAAGGCTTTTCAGGTGACTATGCTGCTTCCCATTCTGAGCTTGTTGCTCTTGCATCTGAGTCTGCAGCCAACATAAGGACTATAGCGTCATTTTGCCATGAAGAACATGTAATCATGAAAGCAAAGACATCTCAGGAAATTCCAATGAGAAAGTACAGGAATGAAAGCATCAAATACGGGATCGTTCAAGGCTTCTCCCTTTGCTTGTGGAACATTGCACATGCTGTTGCTCTGTGGTATACAACAATTCTAGTTGAAAGACGTCAAGCCACCTTTAAAAATGGAATACGAGCATACCAAATCTTTTCTCTCACTGTTCCCTCTATCACAGAATTATATACACTGATCCCAACTGTCATCTCAGCTATCAATGTACTAACCCCAGCATTCCAAACGCTTGATCGGAAAACTGAAATCGAACCAGATACACAGGATGATTCCCAACCGGAGAGGATCCTAGGAGAAGTTGAATTTGAACATGTAAAATTCAACTACCCTTCAAGACCTGCAGTCACTGTTCTGGACAACTTCAGTTTACAAATTGAAGCTGGATCAAAGGTGGCTTTTGTAGGACCGAGTGGTGCGGGAAAATCCTCTGTTTTGGCCCTTATACTAAGATTTTATGATCCAAGGGCAGGAAAGGTATCAATTGATGGGAGAGATATACGGGGATATAATCTAAGATGGCTAAGGACTCAAATAGGGCTAGTACAACAAGAACCACTTCTTTTTAACTGCTCTATAAGAGACAACATTTGCTATGGACACAATGGGGCTTCTGAAAGTGAAATAGTGGAGGTTGCCAGAGAAGCAAACATACATGAATTTGTAAGTAACCTACCAGATGGATATAACACTGTTGTTGGGGAAAAAGGGTGCCAGCTTTCAGGAGGTCAAAAGCAAAGAATAGCCATTGCCAGAACCTTGCTAAAGAAGCCTGCAATTTTACTCCTAGATGAAGCAACAAGTGCTCTTGATGCTGAGTCGGAAAGAACTATTGTGAGCGCTTTAAAAGCAATAAATCTCAAGGAGGACAGTGGCTTGTGTTCAAGGACTACCCAGATTACGGTAGCTCACAGGCTTTCCACAGTAATAAATTCGGATACCATAATTGTCATGGACAAGGGTAAGATTGTAGAGATGGGATCCCACTCAACCCTAATAACAACTGGAGAAGGACTCTATTCGAGGTTATTCAAGCTACAGAGCTTTGATGAATCCTCGTAA 3414 0.4297 MYTSERQLSRLRIAYLKAVLSQEIGAFDTELTSGKVISGISKHMSVIQDAIGEKLGHFTSSCSTFFSGIVIAAICCWEVSLLCLVVVPLILMIGATYTKKMNTISTTKMFFHSEATAMIEQTISHIKTVYAFVGESSAIKSFRENMEKQFQISKGEALVKGVGTGMFQTVSFCSWALIVWVGAVVVTAGRAKGGNIIAAVMSILFGAISITYAAPDMQIFNQAKAAGYEVFQVIQRKPLISNEAQGRKVTEITGDIELRDVYFTYPSRPEKPILQGLSLSIPAGRTVALVGSSGCGKSTVISLVNRFYDPARGEVFIDGHNIKDLDLKFLRSNIGLVSQEPSLFAGTIKDNLKVGKMDADDQEIQKAAEMSNAHTFVSQLPNQYLTEVGQRGVQLSGGQKQRIAIARAILKNPPILLLDEATSALDTESEKLVQEALETAMQGRTVILIAHRLSTVVNADMIAVVENGQVVETGTHQNLLDKSDFYRALYSMQNLEAAPESSTTISKSKSTHQGDSTDEAKLSEKQKETQINPMEDSELKGQETRKRNIFFRIWFGLKPRELAKIAFGSAAAAFSGVSKPVFGYCIITIGVAYFDPDAKRKVGYYSAFFSAIGLLSLLSNTIQHYFYGVVGEKAMENFRHALYKGVLRNEVGWFDRSDNTVGSLTSRIISDTALVKIIIADRMAVIVQCISSILIATGVSMYVDWRMALVAWAVMPCHFIGGLIQAKSAKGFSGDYAASHSELVALASESAANIRTIASFCHEEHVIMKAKTSQEIPMRKYRNESIKYGIVQGFSLCLWNIAHAVALWYTTILVERRQATFKNGIRAYQIFSLTVPSITELYTLIPTVISAINVLTPAFQTLDRKTEIEPDTQDDSQPERILGEVEFEHVKFNYPSRPAVTVLDNFSLQIEAGSKVAFVGPSGAGKSSVLALILRFYDPRAGKVSIDGRDIRGYNLRWLRTQIGLVQQEPLLFNCSIRDNICYGHNGASESEIVEVAREANIHEFVSNLPDGYNTVVGEKGCQLSGGQKQRIAIARTLLKKPAILLLDEATSALDAESERTIVSALKAINLKEDSGLCSRTTQITVAHRLSTVINSDTIIVMDKGKIVEMGSHSTLITTGEGLYSRLFKLQSFDESS* 1138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1852 1137 Gene3D - 875 1136 IPR027417 -
Ahy20g1852 1137 Gene3D ABC transporter type 1, transmembrane domain 2 848 IPR036640 GO:0005524|GO:0016021
Ahy20g1852 1137 SUPERFAMILY ABC transporter transmembrane region 553 870 IPR036640 GO:0005524|GO:0016021
Ahy20g1852 1137 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 222 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ahy20g1852 1137 MobiDBLite consensus disorder prediction 500 540 - -
Ahy20g1852 1137 ProSitePatterns ABC transporters family signature. 1024 1038 IPR017871 GO:0005524
Ahy20g1852 1137 PANTHER OS08G0153200 PROTEIN 1 1132 - -
Ahy20g1852 1137 MobiDBLite consensus disorder prediction 512 540 - -
Ahy20g1852 1137 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 566 850 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ahy20g1852 1137 Pfam ABC transporter 903 1052 IPR003439 GO:0005524
Ahy20g1852 1137 CDD ABC_MTABC3_MDL1_MDL2 256 493 - -
Ahy20g1852 1137 Pfam ABC transporter transmembrane region 2 207 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ahy20g1852 1137 Pfam ABC transporter transmembrane region 570 824 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ahy20g1852 1137 SMART AAA_5 283 475 IPR003593 -
Ahy20g1852 1137 SMART AAA_5 912 1106 IPR003593 -
Ahy20g1852 1137 Gene3D - 246 494 IPR027417 -
Ahy20g1852 1137 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 248 493 IPR027417 -
Ahy20g1852 1137 CDD ABC_MTABC3_MDL1_MDL2 885 1131 - -
Ahy20g1852 1137 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 256 492 IPR003439 GO:0005524
Ahy20g1852 1137 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 1 1132 IPR039421 -
Ahy20g1852 1137 SUPERFAMILY ABC transporter transmembrane region 2 238 IPR036640 GO:0005524|GO:0016021
Ahy20g1852 1137 CDD ABC_6TM_Pgp_ABCB1_D1_like 1 230 - -
Ahy20g1852 1137 Pfam ABC transporter 274 423 IPR003439 GO:0005524
Ahy20g1852 1137 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 878 1131 IPR027417 -
Ahy20g1852 1137 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 885 1129 IPR003439 GO:0005524
Ahy20g1852 1137 ProSitePatterns ABC transporters family signature. 395 409 IPR017871 GO:0005524
Ahy20g1852 1137 CDD ABC_6TM_Pgp_ABCB1_D2_like 580 868 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1852 Ahy-Chr20 101668882 101674092 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1852 1 1133 Calmodulin-binding Proteins AT2G36910 41.916 0.0 900
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1852 20 101668882 101674092 Ahy10g1432 10 79435378 79439522 hybridization