Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1839 ATGGAAGCTCTTTTGTGCAGAAAACTTGGTGATCCATCGTTATCTTTGGAAGACGATAACAGCCCAATAATTGTGTCCAAGAACCATCCAGTTCCTCAGTTGAAGTCTCCCACTTCTGTAAGAGTCAGAATCAAGGCTACGAGCTTGAATTTTGCAAATTACTTGCAGATCCAAGGTAAGTATCAGGAGAAGGCGACTTTGCCATTCATACCTGGATCCGATTACTCGGGAATCGTTGACGCCGTTGGCCCCAAAGTTTCAAACTTTCGTGTTGGGGACCCTGTTTGTTCCTTTGCTGCTCTTGGTTCATTCGCTGAGTTCATTGTTGTTGACGAGAACGAGTTGTTTCGTGTGCCAGAAGGTTGTGATCTTGTTGCTGCTGGAGCACTTGCTGTGGCATTTGGCACTTCTCATGTAGCACTTGTCCATAGAGCTAATTTAACCTCTGGTCAGGTGTTGGTGGTTTTGGGTGCAGCAGGAGGTGTAGGGCTTGCAGCTGTTCAAATTGGAAAAGCGTGTGGTGCCATTGTCATTGCTGTTGCTAGGGGAGCTGAAAAGGTGCAGATTTTGAAGACTCTTGGTGTTGATCATGTGGTGGACTTGGTCAGTGAAAATGTTATCGAGAGTGTGAAAGAGTTCCTTAAGGCTAGAAGGCTTAAAGGTGTTGATGTCCTCTATGACCCGGTTGGAGGCAAGCTTACGAAAGAAAGTATGAAACTTCTGAAATGGGGAGCTCAGATTCTCATAATTGGGTTTGCAAGCGGCGAAATTCCTGTCATCCCTGCTAACATAGCTCTTGTTAAGAATTGGACAGTTCATGGTCTTTATTGGGGTAGCTACAAGATACATCGCCCAGCTGTTCTTGAAGATTCTTTAAAAGAGTTATTGTCTTGGTTGGCAAGAGGCCTGATTTCCATCCACATTTCTCATTCTTACCGCTTGTCAGAGGCCAACCTTGCGTTTTCTGCTATCAAAGATAGGAAAGTCATTGGGAAGGTGATGATTGTGTTTGATGACAAACTTACAAGATCTAAGCTGTGA 1041 0.4457 MEALLCRKLGDPSLSLEDDNSPIIVSKNHPVPQLKSPTSVRVRIKATSLNFANYLQIQGKYQEKATLPFIPGSDYSGIVDAVGPKVSNFRVGDPVCSFAALGSFAEFIVVDENELFRVPEGCDLVAAGALAVAFGTSHVALVHRANLTSGQVLVVLGAAGGVGLAAVQIGKACGAIVIAVARGAEKVQILKTLGVDHVVDLVSENVIESVKEFLKARRLKGVDVLYDPVGGKLTKESMKLLKWGAQILIIGFASGEIPVIPANIALVKNWTVHGLYWGSYKIHRPAVLEDSLKELLSWLARGLISIHISHSYRLSEANLAFSAIKDRKVIGKVMIVFDDKLTRSKL* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1839 346 PANTHER SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1 336 - -
Ahy20g1839 346 Gene3D - 30 331 - -
Ahy20g1839 346 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 122 288 IPR036291 -
Ahy20g1839 346 SMART PKS_ER_names_mod 10 335 IPR020843 GO:0016491
Ahy20g1839 346 Pfam Alcohol dehydrogenase GroES-like domain 38 97 IPR013154 -
Ahy20g1839 346 PANTHER QUINONE OXIDOREDUCTASE-LIKE PROTEIN 2 1 336 - -
Ahy20g1839 346 SUPERFAMILY GroES-like 20 154 IPR011032 -
Ahy20g1839 346 CDD QOR1 1 335 - -
Ahy20g1839 346 Gene3D - 133 280 - -
Ahy20g1839 346 Pfam Zinc-binding dehydrogenase 161 300 IPR013149 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1839 Ahy-Chr20 100942717 100944879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1839 68 266 Monolignol Biosynthesis Gene Families AT1G72680 28.390 6.44e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1839 K00344 - gmx:100817700 584.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1839 20 100942717 100944879 Ahy20g1839 20 100942717 100944879 ECH
Ahy20g1839 20 100942717 100944879 Ahy10g1421 10 78699848 78701915 hybridization