Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1837 ATGTATTTTCCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGTAAATAATAACGGTATAGATACCAGTGATGTGACTTGGCGTAGTAGCATCAACATCCCCTTAAGATTCCGCACTCCTCTTTCTCTTGTTCTCGAATATTCTGGCATCATGTCCTCAAACCCCGATGTTTCTTCTCCTGCACCTGCACCTGCACCTGCACCTGCACCTGCACCTGGAGATGGACCTTCAACAACTCATTTGCGCCCTAGGTCTCAGCTTCAATCTGGTTCTGGTCCTGGTGGTGCCTGCAGTGGTACTGGTGAAGTTCAAATTCGCATAATTGGTACTGGGGACCAAGACAACAATGGTGTGATTGGTTCGGTTTCCTCTTCTTCGCAGCTGAGTCGTGTGTCTCGATCGGGCCATCATGAGTGTATCATGGTCAACGGACGGCCGTGGCCGCCGCCGAACATTACCGACCCTGAGACTCGGCACCGGCTGATTCAGGACCCGCCTGTGTACGAGACACCTGCGTCTGAGGTGTATGAGCTTCTTGGTAGTAGTAATAGGAATGTTCAGCAGGCTGTTAAGTGGCTGGAACAGCTTATCCCTTTCTCCCTCTTGCTGTTGGTGGTGTTCATTCGCCAGCATTTGCAAGGTTTCTTTCTCACAATTTATGTGTCAGCTGTGCTGCTTAAATCAAATGAGGTGGTTAAGGAACAGACAGCTCTAAAGGGAGATCGGAAAGTCTCCGTTCTTGTTGGTATCTCGGTTGCCTTCATGCTGCACGTGATAGCCATTTACTGGTTTCAAAATGATGATCTTTTATACCCAATTGCAATGCTTCCTCCAAAAGAAACACCGCTTTTCTGGCATGCAATATTCACCGTTTTGATCAATGATACATTGGTGCGGCAAGCAGCAATGGCTTTCAAGCTTTTGGTGCTAATTTTCTACAAATGTCGCAGAGGCCCCAGCTTCCGTCGGCAGGGTCAAATCTTAACTGCGGTTGAGTACGTGTTGCTGTTGTATCGTGCCTTGCTGCCAACACCAGTTTGGTATCGGTTTTTCTTGAACCATGATTATGGAAGTCTCTTTTCATCACTGACCACAGGGTTGTATCTAACATTCAAACTAACAACTTTAGTTGAGAAGATCCAAAACTTCTTTTCTGCCTTAAGACTATTATCGGGAAGGAAAGTCCAATATGGGGTTTATGCTACAAAGGAACAGGTAAAGTCTGCTGGTGACATGTGTGCTATATGCCAGGAGAAGATGCGAGCTCCGCTCTTGTTGCACTGTAAACACTTGTTCTGTGAGGAATGTGTGTCCGAATGGCTTGAGCGAGAAAGGACTTGCCCATTATGCAGAGCAAATGTAAAATCTGCTGATCTGCTCACCTATGGAGATGGTTCGACAAGTATTTTGTGTCAGTTGTTTTAA 1446 0.4592 MYFPSSSSSSSSSSSSSSSSSVNNNGIDTSDVTWRSSINIPLRFRTPLSLVLEYSGIMSSNPDVSSPAPAPAPAPAPAPGDGPSTTHLRPRSQLQSGSGPGGACSGTGEVQIRIIGTGDQDNNGVIGSVSSSSQLSRVSRSGHHECIMVNGRPWPPPNITDPETRHRLIQDPPVYETPASEVYELLGSSNRNVQQAVKWLEQLIPFSLLLLVVFIRQHLQGFFLTIYVSAVLLKSNEVVKEQTALKGDRKVSVLVGISVAFMLHVIAIYWFQNDDLLYPIAMLPPKETPLFWHAIFTVLINDTLVRQAAMAFKLLVLIFYKCRRGPSFRRQGQILTAVEYVLLLYRALLPTPVWYRFFLNHDYGSLFSSLTTGLYLTFKLTTLVEKIQNFFSALRLLSGRKVQYGVYATKEQVKSAGDMCAICQEKMRAPLLLHCKHLFCEECVSEWLERERTCPLCRANVKSADLLTYGDGSTSILCQLF* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1837 481 ProSitePatterns Zinc finger RING-type signature. 435 444 IPR017907 -
Ahy20g1837 481 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 7 481 - -
Ahy20g1837 481 MobiDBLite consensus disorder prediction 86 102 - -
Ahy20g1837 481 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 401 467 IPR013083 -
Ahy20g1837 481 MobiDBLite consensus disorder prediction 60 107 - -
Ahy20g1837 481 SUPERFAMILY RING/U-box 413 463 - -
Ahy20g1837 481 MobiDBLite consensus disorder prediction 1 31 - -
Ahy20g1837 481 SMART ring_2 420 457 IPR001841 -
Ahy20g1837 481 ProSiteProfiles Zinc finger RING-type profile. 420 458 IPR001841 -
Ahy20g1837 481 Pfam Zinc finger, C3HC4 type (RING finger) 418 463 - -
Ahy20g1837 481 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 7 481 IPR044235 GO:0061630|GO:1904294
Ahy20g1837 481 CDD RING-HC_RNFT1_like 419 458 - -
Ahy20g1837 481 MobiDBLite consensus disorder prediction 66 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1837 Ahy-Chr20 100690567 100694772 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1837 45 481 C3H Transcription Factor Family AT5G01960 52.164 5.39e-161 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1837 - K22379 gmx:100784614 485.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1837 20 100690567 100694772 Ahy10g1419 10 78564626 78568884 hybridization