Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1834 ATGCTGCTTATCTCTTTCATCATTCAAAACCCCTTTTCTCTTCAAAGAACCCAGAAGGCCAGAACCCTAAAAGCTTCGAAGAACCCCAGTCCTCACCCCAGCACTCCGTCGTCACTCTCTCTTTTGGCACTCCCACCATCGCTGCTCCTTCGGCGGTGGTTCTCTCTGGTGGTGACTCCCTCGTCGCACACCGTCCGTCGCAAGCTTTCCGTCGCAAGTCTCTCTGGTGGTGACTTCCTCCGAGTTCACTCGGTCGACTCGGAGCAGCCTCTGGACCCTGAATCCATCTTCTCCGAGAACGATGAAGATTCGAGCCCTAAATTCAGGGGGCGAAGAGGTGTTCTCCACTTGTTCCGGAGCTCCTCTCATTCCTCAATCCCAAGCCCTAGCTCTGGCTCTTCTCTTGTCTTCATTCTCACCGTTCCCAATCACCTCTCCTTCGATGACCTCATTCGCTGGTGCGGGCCCCACCTCCACCATCTCCACCGCCTCCTCTTCATCAGGGTAGGTATAGGTGAAATAAAGAAGATGGCTTTTCCAGGAGCAAATGAATCCATGTCAGGAGCAAGTTCACCACAGAGAAAGATGGGAAGGGGTAAGATTGAGATCAAGAGGATTGAGAACACTACAAATCGCCAAGTAACCTTTTGCAAGCACAGAAATGGTCTTCTCAAGAAAGCATATGAGTTATCTGTGCTTTGTGATGCTGAGGTTGCTCTTATAGTTTTCTCCAGCCGTGGTCGCCTTTATGAATATGCCAATAACAGATGCATTCCCTACAGATACAAGAATAATGGAACACATGACAAAGAAATAGAGGTTCTTGTGATTAGTGCTCCGAAGGGCAAAGGAATGCAGTTCCCAAAGATAGAAGTGGAATACTCACTACACTTTGCGAGCACTCCTTTCAATCCCCTTGGTGTTTTAAAGTGGACATACTTGTCTTGCCAGATTTTGGATGAATACAACCGTCTTCTAACATCTCAGTTGGAAACTCAAAGACAATATTATGAATCTTTGCTGGCAGAGGCAAAAAGCAAAGTGGACAGTTCTGTCTCTGAAGCAGTGGAGAAAGCTGTAACTTCTGGATTGCAGGACATCCAAGATAAACTGGAAAAGTGTACAGAATAG 1131 0.4748 MLLISFIIQNPFSLQRTQKARTLKASKNPSPHPSTPSSLSLLALPPSLLLRRWFSLVVTPSSHTVRRKLSVASLSGGDFLRVHSVDSEQPLDPESIFSENDEDSSPKFRGRRGVLHLFRSSSHSSIPSPSSGSSLVFILTVPNHLSFDDLIRWCGPHLHHLHRLLFIRVGIGEIKKMAFPGANESMSGASSPQRKMGRGKIEIKRIENTTNRQVTFCKHRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNRCIPYRYKNNGTHDKEIEVLVISAPKGKGMQFPKIEVEYSLHFASTPFNPLGVLKWTYLSCQILDEYNRLLTSQLETQRQYYESLLAEAKSKVDSSVSEAVEKAVTSGLQDIQDKLEKCTE* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1834 376 CDD MADS_MEF2_like 197 265 IPR033896 GO:0000977|GO:0045944
Ahy20g1834 376 PANTHER MADS BOX PROTEIN 192 268 - -
Ahy20g1834 376 SUPERFAMILY SRF-like 197 259 IPR036879 GO:0003677|GO:0046983
Ahy20g1834 376 Coils Coil 364 376 - -
Ahy20g1834 376 Pfam BRCA1-associated protein 2 129 169 IPR011422 -
Ahy20g1834 376 ProSiteProfiles MADS-box domain profile. 196 256 IPR002100 GO:0003677|GO:0046983
Ahy20g1834 376 SMART madsneu2 196 255 IPR002100 GO:0003677|GO:0046983
Ahy20g1834 376 Gene3D - 208 274 IPR036879 GO:0003677|GO:0046983
Ahy20g1834 376 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL1-RELATED 192 268 - -
Ahy20g1834 376 MobiDBLite consensus disorder prediction 20 39 - -
Ahy20g1834 376 PRINTS MADS domain signature 233 254 IPR002100 GO:0003677|GO:0046983
Ahy20g1834 376 PRINTS MADS domain signature 198 218 IPR002100 GO:0003677|GO:0046983
Ahy20g1834 376 PRINTS MADS domain signature 218 233 IPR002100 GO:0003677|GO:0046983
Ahy20g1834 376 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 205 252 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1834 Ahy-Chr20 100591935 100596393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1834 196 263 MADS-box Gene Family AT4G09960 87.143 1.58e-35 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Ahy20g1834 SRF-TF 7.10E-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1834 K09264 - aip:107624459 680.248