Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1779 ATGGGTGAGGTAGTTGTGAGCGAGAGATTAGTTGGAACGGTTGAGGAAGAAGAGAAGCAGACGACTACGGTGGCGGCTGCCGAGGAAGAAACTACTGCAACGGAGGGCAAAGGCGGAGGAGGAGAATCGAAAGGGCTGATGAGGTGGGAGAAGTTCTTGCCGAAGATGGTACTGAGGGTGCTCTTGGTTGAAGCTGATGATTCCACGAGGCAGATTATAGCTGCGCTCCTCAGAAAATGCAGCTACAAAGTGGCGGCTGTTCCTGATGGCCTAAAGGCATGGGAAATACTCAAGGGAAGACCCCACAATATCGATCTAATACTGACGGAAGTGGATTTACCTGCCATATCTGGCTATGCACTTCTCACTTTAATTATGGAACATGATATTTGCAAAAATATCCCTGTCATAATGATGTCCTCACAAGATTCTATAAGTACAGTATACAAGTGTATGCTGAGGGGAGCTGCTGATTATCTTGTTAAGCCCCTTAGAAAAAATGAATTGAGGAATTTGTGGCAGCATGTTTGGAGAAGGCAATCGTCAACTGTTGCCATGAATGGCCTCCAAGATGACAGTGTTGCACAGCAGAAGGTTGAAGCCACTGCTGAAAACAATGATGCTAGTATTCGTTCAAGTGGTGATGCTGCTTCCATTCAGAGAAATAAGGAATTAATCGAGAAAGGAAGTGATGCACAGAGCTCTTGCACAAAGCCCGACCTGGAAGCTGAGAGTGGCCCTGTCGATAACATGCAGGAATTTGCTTCACTGAAATGTGGTGAATCATATCCAACTGGAACAATGACACAAGAGGTAGAAACGTGCATGCGATTGGGGCAGATATCAGTTATGCATGACAGTCATGCTGGAGGATTAGCTATGGCTAGTAGCAAAAATTGTGAGACAAGCACAACCAATGGCAAGGATGGTGATACAGAACATTTTCGGAGTGCTACTATCTGTGGTGAGGCTCATGACAATCACTGTGTTCAAATTAGCTGTTCTAAGGAAGCTATTGACTTGATTGGAGCATTTCATAATCGTCCAAACTGCAGCCTCAAAACTCCCACAGTTAACTGCACAGGAAAGTTTGACTTCATTCCGCAGTTGGATCTTTCCCTAAGAAGACCTCATCCCAGCAACTGTGACAATGAACTCGCTGAAGAAAGAAATACCATCATGCATTCAAATGCCTCAGCTTTCAAGCGGTATACAAACAGGCAATTTCAAGCCTCACCTGCGATTTTAAACTTCTCTGACCAACAAAGGGAACAGAGAACAAATTGCGAGAAAAGTATTTCCCATTTTGCTACTGGCTGTAATTCAGATAGTTCAACACCTAGTGTGCAAAGAAATCTTTTATCTCCAACTACACCCCAATCGAAAGAATCTGAAGCAGCAACTTCACACTCGCAACAGCAAGGGCACTCTCTCCCGATTGCAGTTAAAGGTGTAAGGTTCAATGATTTATGCACGGCCTATGGTTCTGTACTTCCTCCAATGTTTCGCACGCAATCGGGTCCACCATTGGTGCCTAGCCCCAGTTCAGTTGTGCTTCTTGAACCAGCCTTTCAAGTAAATGCATTTTATCAATCAAGTGTTAAAGACAATAGTTCAGAGCAGGTTTATGAATCTCCCAGTTCTGGTGGAAAAAGTGCTCCAAACAACATGATTTCCAGACCGGAACACAAACCAGAACATGCTGAGGATCGAAGACACATCTCTCCTGCAACTGATCAAAGTGGATCCGGTAGCTTCTGTAATGGAAATGCAAGCCATCTTAATAGCATGGGGTATGGAAGCAACTGTGGAAGCAGCAACATTGTTGATCAGGTCCCAATTGGCAGAGCAGCTTCAGAGGGTAAGAATGAAGAGATGGCAAACAATGCAAGCTCTCATCGATCTATCCAAAGAGAAGCAGCTCTAAATAAGTTCCGCTTGAAAAGGAAAGAGAGATGCTATGAGAAGAAGGTTCGATATGAGAGCAGAAAGAAACTAGCAGAGCAGCGCCCGAGAGTGAAAGGTCAATTTGTTCGTCAAGTGCAGCCGGATGCTCTTGCTGCAGAGAAAGATGGCAAAGAATATGATCTTTAA 2094 0.4456 MGEVVVSERLVGTVEEEEKQTTTVAAAEEETTATEGKGGGGESKGLMRWEKFLPKMVLRVLLVEADDSTRQIIAALLRKCSYKVAAVPDGLKAWEILKGRPHNIDLILTEVDLPAISGYALLTLIMEHDICKNIPVIMMSSQDSISTVYKCMLRGAADYLVKPLRKNELRNLWQHVWRRQSSTVAMNGLQDDSVAQQKVEATAENNDASIRSSGDAASIQRNKELIEKGSDAQSSCTKPDLEAESGPVDNMQEFASLKCGESYPTGTMTQEVETCMRLGQISVMHDSHAGGLAMASSKNCETSTTNGKDGDTEHFRSATICGEAHDNHCVQISCSKEAIDLIGAFHNRPNCSLKTPTVNCTGKFDFIPQLDLSLRRPHPSNCDNELAEERNTIMHSNASAFKRYTNRQFQASPAILNFSDQQREQRTNCEKSISHFATGCNSDSSTPSVQRNLLSPTTPQSKESEAATSHSQQQGHSLPIAVKGVRFNDLCTAYGSVLPPMFRTQSGPPLVPSPSSVVLLEPAFQVNAFYQSSVKDNSSEQVYESPSSGGKSAPNNMISRPEHKPEHAEDRRHISPATDQSGSGSFCNGNASHLNSMGYGSNCGSSNIVDQVPIGRAASEGKNEEMANNASSHRSIQREAALNKFRLKRKERCYEKKVRYESRKKLAEQRPRVKGQFVRQVQPDALAAEKDGKEYDL* 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1779 697 MobiDBLite consensus disorder prediction 440 477 - -
Ahy20g1779 697 MobiDBLite consensus disorder prediction 535 586 - -
Ahy20g1779 697 CDD psREC_PRR 60 163 - -
Ahy20g1779 697 MobiDBLite consensus disorder prediction 560 576 - -
Ahy20g1779 697 SUPERFAMILY CheY-like 58 185 IPR011006 -
Ahy20g1779 697 ProSiteProfiles Response regulatory domain profile. 59 177 IPR001789 GO:0000160
Ahy20g1779 697 SMART REC_2 58 173 IPR001789 GO:0000160
Ahy20g1779 697 MobiDBLite consensus disorder prediction 535 555 - -
Ahy20g1779 697 Gene3D - 56 274 - -
Ahy20g1779 697 Pfam CCT motif 638 680 IPR010402 GO:0005515
Ahy20g1779 697 Pfam Response regulator receiver domain 60 171 IPR001789 GO:0000160
Ahy20g1779 697 PANTHER POPULUS TRICHOCARPA PSEUDO-RESPONSE REGULATOR 5A MRNA 16 671 - -
Ahy20g1779 697 MobiDBLite consensus disorder prediction 17 43 - -
Ahy20g1779 697 PANTHER TWO-COMPONENT RESPONSE REGULATOR 16 671 IPR045279 GO:0009736
Ahy20g1779 697 ProSiteProfiles CCT domain profile. 638 680 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1779 Ahy-Chr20 95103928 95108951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1779 337 498 Response Regulator Gene Family AT5G24470 29.412 1.97e-07 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Ahy20g1779 Response_reg 6.90E-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1779 K12130 - gmx:100777119 993.801
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1779 20 95103928 95108951 Ahy10g1381 10 75839996 75845215 hybridization