Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1766 ATGAGTGGTCGCTTTTCTCGCACAATTTATGTTGGTAATCTGCCCTCGGATATAAGAGAATCAGAAATAGAAGATTTATTCTACAAGTATGGCCGTATCATGGATATTGAATTGAAGATTCCACCCCGCCCTCCATGTTATTGCTTTGTTGAGTTTGACAATGCTCGAGATGCAGAAGAAGCAATTCGAGGTCGAGATGGGTACAACTTTGATGGTTGTCGTTTAAGGGTGGAGCTTGCCCATGGTGGTAGAGGGCCATCATCAAGTGATCGTCGTGGCTATGGTGGTGGAGGTGGCGGTGGTGGTGGTGGTGGTGGGGGCCGTTTTGGGGTATCACGCCATTCTGAATACCGAGTTATTGTTCGTGGACTTCCCTCTTCTGCATCCTGGCAAGATTTGAAGGATCATATGCGAAAAGCTGGTGATGTATGCTTTGCTGAGGTTTCCCGTGATAGCGAAGGGACTTTTGGCATTGTTGATTACACTAATTATGATGACATGAAATATGCTATTCGGAAACTGGATGATACTGAGTTTAGAAACCCTTGGGCAAGAGCTTATATTCGGGTGAGGAAGTATGAGGGTAGTCGTTCAAGGAGCCGCAGCAGAAGCCCCAGCAGGAGTAGAAGTCCTAAGAGGGATAGAAGATCATTGGAGCGATCTCTGTCTAGGTCACGTTCTAGATCCAGATCCGCATCCCCAATCAAGGCTTCAAGGCCAAGATCACGATCGCGGTCTGCATCACCACACCAGGTGCTATCAGGAAGTGCTTGA 774 0.4742 MSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRIMDIELKIPPRPPCYCFVEFDNARDAEEAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYGGGGGGGGGGGGGRFGVSRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVRKYEGSRSRSRSRSPSRSRSPKRDRRSLERSLSRSRSRSRSASPIKASRPRSRSRSASPHQVLSGSA* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1766 257 MobiDBLite consensus disorder prediction 211 226 - -
Ahy20g1766 257 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 195 IPR000504 GO:0003723
Ahy20g1766 257 CDD RRM2_SF2_plant_like 117 192 - -
Ahy20g1766 257 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Ahy20g1766 257 MobiDBLite consensus disorder prediction 194 257 - -
Ahy20g1766 257 CDD RRM1_SF2_plant_like 8 79 - -
Ahy20g1766 257 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR34A 2 254 - -
Ahy20g1766 257 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 254 - -
Ahy20g1766 257 MobiDBLite consensus disorder prediction 81 108 - -
Ahy20g1766 257 Gene3D - 2 116 IPR012677 -
Ahy20g1766 257 Gene3D - 117 194 IPR012677 -
Ahy20g1766 257 SUPERFAMILY RNA-binding domain, RBD 6 187 IPR035979 GO:0003676
Ahy20g1766 257 SMART rrm1_1 118 187 IPR000504 GO:0003723
Ahy20g1766 257 SMART rrm1_1 8 78 IPR000504 GO:0003723
Ahy20g1766 257 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Ahy20g1766 257 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 181 IPR000504 GO:0003723
Ahy20g1766 257 MobiDBLite consensus disorder prediction 227 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1766 Ahy-Chr20 93774435 93778671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1766 6 175 Eukaryotic Initiation Factors Gene Family AT4G34110 24.432 6.04e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1766 K12890 - gmx:100800653 361.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1766 20 93774435 93778671 Ahy10g1367 10 74845423 74849619 hybridization