Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1762 ATGGAAATTTTTCTTGTTGATGAAGATTCTAACAAAATCCAAGCAACTGTTAAGAAGCATCTCATAAATAGTGTTGTTCCAAACCAAGACAATTATAGGGTAGCAGAACATGAGTTTAAGTTGGTTTTCCTTAACCGTACAACTGTTATTCCTGTCCCTGATGATGCTATCCCCAAGACATGTTTCAGTTTCTATCCATTTGATGAGCTGTTGAAAATGACTACAGATTATGTTTACTTAGTTGATGTTATTGGTTTGCTAACTTCTGTTGGTGAAGAGAAAGAGTATGTGAAAGATGGCAAAGTGATGAAGATGATTGTTCTTGAGTTATCTTCAAAAGAGTTGGCAATACGCTGTGCTCTGTTTGGGGAGTACGTGGATGAAGTGCATCGTTTCTTAGGTTCTAGTTATATGGAGCAGCCAGTTGTTGTGATCCAGTTTGCCAAAGTTAAATTCTTTAGGGGACAAGTTGGTATCCAAAATGTTATGCATGCTACTCGCCTGTTCTTTAATCCAGATTTGGCTGAAGTTGTTGATTTCAAAAACAGTATGGTTGATCAAGGTATCAATGGAACACAACCATTGTTTATTGCTAATGACGGCAAGGGTATTTCATTGGAAGATGATTTTATGTGGCTTACTAGGAGATGCACTATTAAGGAACTCCATGATAACAATGAGGAAGGGTCTTTTGTGGTTTTTGGTATTGTGAGATCTATTGTGGATGAGGGACCTTGGTGGTATTCAGCTTGTGTTTATGGGAAGTCAATTCAGCCTCAAGGTGGTGCATATTATTATGATTTTTGTCAGCACTATGTTATCAATGTGACTCTTAGATATAGGATCAAAATAGCGGTTGAGAATGATAATGGACATGGTGTATTTGTCTTATTTGATTTTGAGGCTGCTTACTTACTGAAAAAATCATGTGCTGATCTGTTTGAAGAAGTTCAAAAGGATGCAAGTGTTGTTTGTGGAGATAGTTATCCTGTGATGTTCCAGCAATTGTTGGGGAAAAAATTGGTTCTTAAAATAGATACCAAGAGTGTTGGTACAGACAAATATTTTGGAACTTTTCGTGTGAGAAGAGTTTGTGATGATGCAGCTATTATTTCCATGTTTGAGTTGCCTAACTATAATGCGGATGATGAGTGCACTCCATTAAAAGTTGCATCTTCAAACTTGTGTATTTCATATGATGGTTATTTGGGAAAGATCCCTTCAAGTGACCATGAATATATTGTTGGCAAGAAGAATCCGTGTGAGGTGCTGGATGAGAGTATCACTTTTGATGGGAATTGTTCTAATATGAAGACAAACTGCAAGCCTTTGATTGATTTTCTTGGTGAAAAGGGTGCTGAAGTTCCTGGATTGGATGATATAAGTAGTGAAGTTGATATTGTGAAAGAGAGGGAAAATTGTTGA 1425 0.3698 MEIFLVDEDSNKIQATVKKHLINSVVPNQDNYRVAEHEFKLVFLNRTTVIPVPDDAIPKTCFSFYPFDELLKMTTDYVYLVDVIGLLTSVGEEKEYVKDGKVMKMIVLELSSKELAIRCALFGEYVDEVHRFLGSSYMEQPVVVIQFAKVKFFRGQVGIQNVMHATRLFFNPDLAEVVDFKNSMVDQGINGTQPLFIANDGKGISLEDDFMWLTRRCTIKELHDNNEEGSFVVFGIVRSIVDEGPWWYSACVYGKSIQPQGGAYYYDFCQHYVINVTLRYRIKIAVENDNGHGVFVLFDFEAAYLLKKSCADLFEEVQKDASVVCGDSYPVMFQQLLGKKLVLKIDTKSVGTDKYFGTFRVRRVCDDAAIISMFELPNYNADDECTPLKVASSNLCISYDGYLGKIPSSDHEYIVGKKNPCEVLDESITFDGNCSNMKTNCKPLIDFLGEKGAEVPGLDDISSEVDIVKERENC* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1762 474 SUPERFAMILY Nucleic acid-binding proteins 214 374 IPR012340 -
Ahy20g1762 474 PANTHER REPLICATION FACTOR A 1, RFA1 2 314 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy20g1762 474 Gene3D - 56 192 IPR012340 -
Ahy20g1762 474 Gene3D - 211 375 IPR012340 -
Ahy20g1762 474 CDD RPA1_DBD_B_like 82 184 - -
Ahy20g1762 474 SUPERFAMILY Nucleic acid-binding proteins 62 184 IPR012340 -
Ahy20g1762 474 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 2 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1762 Ahy-Chr20 93645534 93648219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1762 24 219 Core DNA Replication Machinery Family AT2G06510 26.667 1.54e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1762 - - aip:107647213 589.726