Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1758 ATGTCACAGCCGAGGCAGAACAAGATGTTGATGAATCCAAACACTGCCAAACATGTAATTGGTGACACAACCTATACCAAGATCTTTGTTGGAGGCTTGGCTTGGGAAACAAAAAGAGACACTCTCAAACGTTATTTTGATCAGTTTGGAGAGATCTTAGAAGCTGTTGTCATCACTGACAGAAACTCTGGAAGATCAAAAGGATATGGCTTTGTTACATTCAAGGACCCAAATTCTGCAATAAGGGCTTGTCAGAATCCATATCCTGTGATAGATGGAAGGAGGGCTAATTGTAATCTTGCATCTCTTGGTGCACAAAAAATTGATCCATCATCTATGACAGCTACTAGACAAAAATTCAGTAGCCCTTCTTGGAATACAGCACCAATTCCAGTTCATCAAGGAACATCCACTTGTTATAATCAGCATATTCCACAGTATACATTTCCTTATCCACCCTACAGGTATCCAGGTTACCCACCCCAACAAGAAGTATATGAAATGCAGAATTACTATAATGCATATGGTGGACAACACTTTCCATTTCGTTGGTTACCAGCATATTACCAACCAATTTATGGGCTAAGTAGGCATCAATTTGTTCCAACAACAGCTTATGTGAAAAAGACACAATTCCCTGATATGTCACCTCAGGAGTTCACACCTACTGTTGCTTCATCAGAACCTATTTCAGCTTCTTCATCAATTTCTACCACTGCAGGATTAATAACAGGAACTGTAGACGCAGGAGGAGGAGGAGGAGGAGTACTAGGATCACAACAAGAACAGAAATCATCATCTTGA 804 0.403 MSQPRQNKMLMNPNTAKHVIGDTTYTKIFVGGLAWETKRDTLKRYFDQFGEILEAVVITDRNSGRSKGYGFVTFKDPNSAIRACQNPYPVIDGRRANCNLASLGAQKIDPSSMTATRQKFSSPSWNTAPIPVHQGTSTCYNQHIPQYTFPYPPYRYPGYPPQQEVYEMQNYYNAYGGQHFPFRWLPAYYQPIYGLSRHQFVPTTAYVKKTQFPDMSPQEFTPTVASSEPISASSSISTTAGLITGTVDAGGGGGGVLGSQQEQKSSS* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1758 267 SUPERFAMILY RNA-binding domain, RBD 3 106 IPR035979 GO:0003676
Ahy20g1758 267 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 103 IPR000504 GO:0003723
Ahy20g1758 267 Gene3D - 1 113 IPR012677 -
Ahy20g1758 267 SMART rrm1_1 27 99 IPR000504 GO:0003723
Ahy20g1758 267 CDD RRM_RBM24_RBM38_like 26 101 - -
Ahy20g1758 267 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 1 266 - -
Ahy20g1758 267 PANTHER BOULE-RELATED 1 266 IPR037366 GO:0003729
Ahy20g1758 267 MobiDBLite consensus disorder prediction 247 267 - -
Ahy20g1758 267 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 85 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1758 Ahy-Chr20 93292843 93295332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1758 22 102 C2H2 Transcription Factor Family AT2G19380 43.210 2.43e-15 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1758 - - adu:107469851 455.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1758 20 93292843 93295332 Ahy10g1356 10 74190232 74192642 hybridization