Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1744 ATGGAACGTGACGGTGGCCATAAACAAACTTCTCACAAAACTCCGTACACTCAGCTTGAACAGGTTAGCTCTGATTTCTTTCTAGCAATTGGCCTGCAAGAGCAAAACGCAACAATATTCACAGCGCTCGCAGCGACACTGGAAAGCGAAGGATCCTCCTCGTCGCTTGATAATGAGCAGGAAGACGATGATAACGCTGATTTCTTCACGAGTTATCAGTTTGAAACGGAGGACCTTCAGTTTCTTGAAAGCGAAGGAAGCAACTACGGTGATGACGAAGGCATGGATGACTTTGACTTCGACGTGGACGAATTGACATATGAAGAGTTAATTGAGTTGGAAGACTTTATAGCGAAGCAGAAGAGAGGGTTATCAGCAAATGAGGTTTCTTCGTGCTTGCATTCCTACACCTTCGATTCTGTTAACGAGAGGAAAAGCAGTGGAACCGATCGGTGCGTGATTTGCCAGATTGAGTATGAAGAAGGTGAAGCGTTGGTGGCACTTCGTTGCGGACATCCTTTCCACACGGATTGCATAAGCAAGTGGCTTCAAGTAAGAAAGGTTTGCCCAATATGTAGCAGTGAAATTTCGGCTCCCGAGATTGTCAATAAACAAGAACCCTTCATTGTTTAG 633 0.4518 MERDGGHKQTSHKTPYTQLEQVSSDFFLAIGLQEQNATIFTALAATLESEGSSSSLDNEQEDDDNADFFTSYQFETEDLQFLESEGSNYGDDEGMDDFDFDVDELTYEELIELEDFIAKQKRGLSANEVSSCLHSYTFDSVNERKSSGTDRCVICQIEYEEGEALVALRCGHPFHTDCISKWLQVRKVCPICSSEISAPEIVNKQEPFIV* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1744 210 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 199 IPR013083 -
Ahy20g1744 210 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED-LIKE 1 201 - -
Ahy20g1744 210 ProSiteProfiles Zinc finger RING-type profile. 152 193 IPR001841 -
Ahy20g1744 210 SMART ring_2 152 192 IPR001841 -
Ahy20g1744 210 CDD RING-H2_PA-TM-RING 152 192 - -
Ahy20g1744 210 SUPERFAMILY RING/U-box 109 199 - -
Ahy20g1744 210 Pfam Ring finger domain 151 192 IPR001841 -
Ahy20g1744 210 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 201 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1744 Ahy-Chr20 90840910 90841801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1744 99 196 C3H Transcription Factor Family AT3G63530 46.465 3.86e-27 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1744 K19045 - gmx:100777284 218.009