Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1740 ATGATGGATGGTGATGATGAGTATATTCAAGCATCTAAAGGGAAGAATGTTGAAAGTTTCACATGTTCAGAAGTAGCACTACCACAGAACAAAAATGCTAAGAAGAAAAAGAGTAAGATAGAGAACAAGAGAAGATTCAGTGATGAGCAAATTAGATCACTTGAGTGCATATTTGAGTCAGAGTCCAAGCTTGAGCCAAGGAAGAAGATTCAGCTAGCAAGAGATCTTGGATTGCAGCCAAGGCAAGTTGCTATATGGTTTCAGAACAGAAGGGCAAGGTGGAAATCAAAACGAATAGAGCAGGAATATAGGAAGCTTAAAGATGAATATGACTGCTTAGCTTCTCGCTTTGAGTCTCTAAAGAAAGAGAAGGACTCTTTACAATTAGAGCTAAAGAAGCTGAATGATTTGATGGTGGTATCAGCATCTCATCATGATGGAAGAAGACAAGAGAAGGTTATTGCAAAGGGAAGTAGAACAGATGATGGTGGTTCAGGAAGTCCTCACAGCAATTGGAGGCCTAACGAAGAAGAAGAAGAAGCAAAGACAAGTTTTTCAAATGACACAGTACCTTTACCTTCTGATGATAAACCTGATGAGGAAAGAGATCACCACCGCCATCACCACCACCAAGATATGAGAATGGATGATGAGGAGCAGCATTTAGAGATTCCTTTGGAATCACTTGAGAAATGGTACAGTGAGGATCCAAGTGGAATCTTGGATCAATCATGTAGCACTTCACAATGGTTGGATTTCTGGACTTGA 768 0.401 MMDGDDEYIQASKGKNVESFTCSEVALPQNKNAKKKKSKIENKRRFSDEQIRSLECIFESESKLEPRKKIQLARDLGLQPRQVAIWFQNRRARWKSKRIEQEYRKLKDEYDCLASRFESLKKEKDSLQLELKKLNDLMVVSASHHDGRRQEKVIAKGSRTDDGGSGSPHSNWRPNEEEEEAKTSFSNDTVPLPSDDKPDEERDHHRHHHHQDMRMDDEEQHLEIPLESLEKWYSEDPSGILDQSCSTSQWLDFWT* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1740 255 MobiDBLite consensus disorder prediction 193 219 - -
Ahy20g1740 255 SUPERFAMILY Homeodomain-like 33 97 IPR009057 -
Ahy20g1740 255 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 5 255 - -
Ahy20g1740 255 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 5 255 IPR045224 GO:0003700
Ahy20g1740 255 CDD homeodomain 43 98 IPR001356 GO:0003677
Ahy20g1740 255 Gene3D - 23 102 - -
Ahy20g1740 255 MobiDBLite consensus disorder prediction 142 219 - -
Ahy20g1740 255 ProSiteProfiles 'Homeobox' domain profile. 37 97 IPR001356 GO:0003677
Ahy20g1740 255 Coils Coil 89 137 - -
Ahy20g1740 255 SMART HOX_1 40 101 IPR001356 GO:0003677
Ahy20g1740 255 MobiDBLite consensus disorder prediction 142 158 - -
Ahy20g1740 255 Pfam Homeobox associated leucine zipper 97 138 IPR003106 GO:0006355|GO:0043565
Ahy20g1740 255 PRINTS Lambda-repressor HTH signature 68 77 IPR000047 GO:0003677
Ahy20g1740 255 PRINTS Lambda-repressor HTH signature 77 93 IPR000047 GO:0003677
Ahy20g1740 255 ProSitePatterns 'Homeobox' domain signature. 72 95 IPR017970 GO:0000981|GO:0006355
Ahy20g1740 255 Coils Coil 30 50 - -
Ahy20g1740 255 Pfam Homeodomain 43 95 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1740 Ahy-Chr20 90482010 90483782 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1740 31 255 Homeobox Transcription Factor Family AT2G46680 40.000 7.16e-43 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ahy20g1740 Homeodomain 2.80E-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1740 K09338 - gmx:100793260 300.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1740 20 90482010 90483782 Ahy10g1333 10 71728103 71729874 hybridization