LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy20g1633	ATGAAGTATAGACAACGTGTACTTGGTTTGATACTTGTTTCACCTTTATGCAAAGAACCATCTTGGACTGAGTGGTCATGTCAAATTTACTCTATTTTGTGGCATGTGCGGGGTGGCAAAGGAAATGTTGCTGAAGTGGACATTCGAGGTGGTGCTCAATTCCCAGAGTCAGATATAGTTAAAGCTTGCCGAAGGTTAGCTTATAACTTCTCACTGCTCCAGCTCTTCCGTGACGACACTATCCTCATCAAGGGCAAGAAAAGGAGGGATACTGTTTGCATAGCTCTTGCTGATGACACCTGTGAAGAGCCCAAGATCAGGATGAACAAAGTTGTAAGGTCGAATTTGCGGGTTCGTCTTGGAGATGTTGTGTCCGTGCACCAGTGCCCTGATGTGAAGTATGGGAAACGTGTGCACATTCTGCCTATTGATGATACCATTGAAGGTGTCACTGGCAATCTGTTTGATGCTTTCTTCAAACCTTACTTCTTGGAAGCTTATCGTCCTGTCAGAAAAGGAGATCTATTTCTTGTCCATGGAGGGATGAGAAGTGTGGAGTTTAAGGTCATTGAAACTGATCCTGGGGAGTACTGTGTGGTTGCTCCAGATACTGAAATCTTCTGTGAGGGGGAGCCTTTGAAAAGAGAGGATGAAGAGAGGCTGGATGTAGTTGGATATGATGACGTGGGTAGAGTCAGGAAACAAATGGCACAAATTTGTGAGTTGGTAGAGCTTCCCTTGAGGCATCCACAACTCTTTAAGTCGATTGGTGTGAAACCACCCAAAGGTATTCTACTTTATGGACCCCCTGGTTCCGGGAAGACACTGATAGCAAGAGCTGTTGCTAATGAAACGGGAGCTTTCTTCTTTTGTATAAATGGACCGGAGATTATGTCCAAACTGGCAGGAGAGAGTGAAAGCAATCTGAGGAAAGCATTTGAAGAGGCTGAAAAGAATGCACCATCCATCATCTTCATTGATGAAATTGATTCTATTGCACCCAAGAGGGAGAAGACACATGGTGAAGTTGAAAGGAGGATTGTTTCACAGCTTTTGACTCTTATGGATGGATTGAAATCTCGTGCTCATGTTATCGTTATTGGAGCTACAAATCGCCCAAATATCATTGACCCAGCATTGAGAAGGTTCGGTAGATTTGATAGGGAAATTGATATTGGTGTTCCTGATGAAGTTGGCCAACTTAAAGTTCTTCGTATACACACTAAAAACATGAAGCTCTCTGATGATGTTGTGCATGCCATGCTGTGGCTCTGGTTGTAG	1281	0.4372	MKYRQRVLGLILVSPLCKEPSWTEWSCQIYSILWHVRGGKGNVAEVDIRGGAQFPESDIVKACRRLAYNFSLLQLFRDDTILIKGKKRRDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAFFKPYFLEAYRPVRKGDLFLVHGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPLKREDEERLDVVGYDDVGRVRKQMAQICELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNIIDPALRRFGRFDREIDIGVPDEVGQLKVLRIHTKNMKLSDDVVHAMLWLWL*	427

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy20g1633	426	CDD	AAA	259	393	-	-
	Ahy20g1633	426	PANTHER	AAA-FAMILY ATPASE	70	418	-	-
	Ahy20g1633	426	Pfam	ATPase family associated with various cellular activities (AAA)	264	393	IPR003959	GO:0005524\|GO:0016887
	Ahy20g1633	426	Gene3D	-	395	417	-	-
	Ahy20g1633	426	Gene3D	-	226	394	IPR027417	-
	Ahy20g1633	426	SMART	AAA_5	260	396	IPR003593	-
	Ahy20g1633	426	Pfam	Cell division protein 48 (CDC48), N-terminal domain	70	130	IPR003338	-
	Ahy20g1633	426	Gene3D	-	68	131	-	-
	Ahy20g1633	426	SUPERFAMILY	ADC-like	71	129	IPR009010	-
	Ahy20g1633	426	SMART	CDC48_2_2	149	215	IPR004201	-
	Ahy20g1633	426	PANTHER	CELL DIVISION CONTROL PROTEIN 48 HOMOLOG E	70	418	-	-
	Ahy20g1633	426	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	225	421	IPR027417	-
	Ahy20g1633	426	ProSitePatterns	AAA-protein family signature.	364	382	IPR003960	GO:0005524\|GO:0016887
	Ahy20g1633	426	Pfam	Cell division protein 48 (CDC48), domain 2	151	212	IPR004201	-
	Ahy20g1633	426	SUPERFAMILY	Cdc48 domain 2-like	131	222	IPR029067	-
	Ahy20g1633	426	SMART	CDC48_N_2	40	132	IPR003338	-
	Ahy20g1633	426	Gene3D	-	132	225	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy20g1633	Ahy-Chr20	65597521	65601059	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy20g1633	224	417	Calmodulin-binding Proteins	AT3G56690	48.980	3.54e-51	183

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy20g1633	K13525		-	gmx:100783508	657.136