Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1627 ATGATGGCTACTCCAACTAAACCAATGGCCATAATGTTGTCTGAATCTTTGGAACACAAGGGAAAGGATATCACTGAATTAAATGGTAACATACTTCAATCCCCTATAAGTCAACAGCCCCATAGCTCCTCTGATGGTTCAGTAGCTATTCTTTGGGACATTGAAAACTGTCCTGTTCCGAGTGATGTCCGCCCTGAAGACGTAGCAGGAAATATAAGGATGGCGTTGCAAGTGCATCCAGTAATTCAAGGAACTGTTATGGTATTTTCTGCTTATGGTGACTTCAACGCTTTCCCTAAGCGACTTAGAGAGGGATGTCTAAGAACTGGTGTTAATCTCATTGATGTTCCTAATGGGAGAAAAGATGCTGCTGATAAAGCAATCTTGGTTGACATGTTTTTATTTGCTCTTGACAACCCTCCCCCATCATCTATTATGCTAATATCTGGAGACGTGGACTTTGCCCGAGCACTTCACATTCTTGGACAACGGGGATACACTATAATTCTTGTCATCCCTTCTGGGGTGGGTGTTTCATCTGCTTTATGCAATGCCGGAAAGTTTGTCTGGGATTGGCCTAGCGTTGCTCGTGGAGAAGGATTTGTTCCCCCGGCAAAGGCTTTAGTACCACCTCGTGGAGGTTCAGTTGAGGTTGCTGGATATTTGATGGGGTGCCATATTAATGACAACTTCGAGGGACAAAATGAGGAAGAAGCAATAGTTTATAGAGGGATGTCACAGAGATTATATAACTCAAGGGATTTCTCTATGGTTTCACAATCTCTATCTGAATACAATTGTACCGCATCGAACATGGCTGGCTTACCGACAACTATGAGATCACACAGCCTTCCACCTGGGATGATTGATGTTTCAGGAATATCTATGCCTTCTAGTGACAATAATGAAGGCCAGCTTTGGGGCCCTATGTCTAGCGATTTAAATGTTCTCAAAGGCCAGTTGGTAAGGTTGCTTGAACTTTCTGGAGGGTGCCTGCCTCTGGCTCGAGTTCCAACAGAGTATCAGAAAGCTTATGGAAGAACTCTTTATGTATCTGATTATGGAGCAATTAAGTTAGTCAATCTTTTCAAGAAGATGGGTGATACAATGGCAGTGGAAGGGAAAGGTCAGCGTAAATTTGTGTATCTCAGAAACTTCAAGGTAGGCCCGAGCGCTCCCCCATTGGCTCTAGCAAAGAAAGACAAGAAAGGAAAGGGGCTTCCAGAAGAGAATATGAATACTGTCAACGGTGGTGGCTCTTCAGATGAGTTCTCAGATGAAGAAAGACTAGTCATGGAAGAACATGATGAGAGAAATTGTGTAGGAAAGGGCAGTCAAAGGAGAGCAGCTATCAATGACCGTGCTCTTGAGCAGTTCAAGTTCGAGCTTCAAGAGATTCTAGTCAGCTACTCGTGTCGAATATTCCTAGGTTGTTTTGAGGATATATACCAACAAAGGTACAAGAGACAATTGGAATATCAGAGACTTGGAGTGAACAAGTTGGAGGATTTGTTTGAGAAAGTCAATGATATTGTAGTATTGGTTGAGGAACCAGGAAGCAAGAGGAAGTTCCTTGCTCCAGTGGGGGGTTAG 1593 0.4338 MMATPTKPMAIMLSESLEHKGKDITELNGNILQSPISQQPHSSSDGSVAILWDIENCPVPSDVRPEDVAGNIRMALQVHPVIQGTVMVFSAYGDFNAFPKRLREGCLRTGVNLIDVPNGRKDAADKAILVDMFLFALDNPPPSSIMLISGDVDFARALHILGQRGYTIILVIPSGVGVSSALCNAGKFVWDWPSVARGEGFVPPAKALVPPRGGSVEVAGYLMGCHINDNFEGQNEEEAIVYRGMSQRLYNSRDFSMVSQSLSEYNCTASNMAGLPTTMRSHSLPPGMIDVSGISMPSSDNNEGQLWGPMSSDLNVLKGQLVRLLELSGGCLPLARVPTEYQKAYGRTLYVSDYGAIKLVNLFKKMGDTMAVEGKGQRKFVYLRNFKVGPSAPPLALAKKDKKGKGLPEENMNTVNGGGSSDEFSDEERLVMEEHDERNCVGKGSQRRAAINDRALEQFKFELQEILVSYSCRIFLGCFEDIYQQRYKRQLEYQRLGVNKLEDLFEKVNDIVVLVEEPGSKRKFLAPVGG* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1627 530 CDD LOTUS 314 383 - -
Ahy20g1627 530 CDD PIN_limkain_b1_N_like 48 173 - -
Ahy20g1627 530 PANTHER LIMKAIN B LKAP 20 525 IPR024768 GO:0005777|GO:0010468|GO:1903231
Ahy20g1627 530 CDD LOTUS 456 519 - -
Ahy20g1627 530 Gene3D - 40 193 - -
Ahy20g1627 530 Pfam NYN domain 48 186 IPR021139 GO:0004540
Ahy20g1627 530 ProSiteProfiles OST-type HTH domain profile. 455 529 IPR025605 -
Ahy20g1627 530 Gene3D - 451 524 IPR041966 -
Ahy20g1627 530 Gene3D - 311 382 IPR041966 -
Ahy20g1627 530 PANTHER - 20 525 - -
Ahy20g1627 530 Pfam OST-HTH/LOTUS domain 315 380 IPR025605 -
Ahy20g1627 530 Pfam OST-HTH/LOTUS domain 456 520 IPR025605 -
Ahy20g1627 530 ProSiteProfiles OST-type HTH domain profile. 313 385 IPR025605 -
Ahy20g1627 530 MobiDBLite consensus disorder prediction 398 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1627 Ahy-Chr20 63308511 63311708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1627 46 198 C2H2 Transcription Factor Family AT5G61190 43.137 1.63e-28 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1627 - - ahf:112715639 1026.16