Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1609 ACTTGTTCCAACCAAAACAACAATGGGTTCCAATCAGATTACAGCAGCAACAACAATTACCAGCCACAATCTCAGACTCTAAGCAGAAGATCAGATGATGGTTACAATTGGAGAAAATATGGTCAGAAACAAGTGAAAGGTAGTGAGAATCCAAGAAGTTACTATAAATGCACATTCCCGAATTGCCCAACAAAGAAGAAAGTTGAGAGATCCTTGGATGGACAAATCACAGAGATTGTTTATAAGGGTACTCATAATCACCCTAAGCCTCAGAATACTAGGAGAAACTCTTCATCTTCTTCTAATTCTACTGCTTTTGCAATTGCTCCCTCCAATCAAATGAACAACTCTGAGGTGACTGATCATCAATCTTATACACATGGTAGTGGACAAATGGATTCTATTGCCACCCTTGAGAACTCCTCAATTTCAGTTGGGGATGATGATTTTGAACAAAGCTCTCAGAGGTGTAAATCAAGTGGAGATGATTATGATGATGATGAACCTGATGCCAAAAGATGGAAAATTGAAGGGGAAAATGAGGGAATATCAGGAGGTGGAAGTAGAACAGTGAGAGAACCAAGGGTTGTGGTTCAGACAACAAGTGACATAGATATCCTTGATGATGGCTACAGATGGAGGAAGTATGGCCAAAAAGTAGTTAAGGGCAATCCAAATCCAAGGTAA 687 0.3974 TCSNQNNNGFQSDYSSNNNYQPQSQTLSRRSDDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLDGQITEIVYKGTHNHPKPQNTRRNSSSSSNSTAFAIAPSNQMNNSEVTDHQSYTHGSGQMDSIATLENSSISVGDDDFEQSSQRCKSSGDDYDDDEPDAKRWKIEGENEGISGGGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPR* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1609 228 Gene3D WRKY domain 15 91 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ahy20g1609 228 MobiDBLite consensus disorder prediction 86 130 - -
Ahy20g1609 228 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 18 228 IPR044810 GO:0003700
Ahy20g1609 228 SUPERFAMILY WRKY DNA-binding domain 30 90 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ahy20g1609 228 MobiDBLite consensus disorder prediction 151 179 - -
Ahy20g1609 228 ProSiteProfiles WRKY domain profile. 202 228 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ahy20g1609 228 SUPERFAMILY WRKY DNA-binding domain 199 228 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ahy20g1609 228 PANTHER WRKY TRANSCRIPTION FACTOR WRKY24-LIKE 18 228 - -
Ahy20g1609 228 MobiDBLite consensus disorder prediction 81 130 - -
Ahy20g1609 228 Gene3D WRKY domain 194 228 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ahy20g1609 228 SMART WRKY_cls 31 89 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ahy20g1609 228 MobiDBLite consensus disorder prediction 1 36 - -
Ahy20g1609 228 MobiDBLite consensus disorder prediction 1 31 - -
Ahy20g1609 228 ProSiteProfiles WRKY domain profile. 32 90 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ahy20g1609 228 Pfam WRKY DNA -binding domain 208 228 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ahy20g1609 228 Pfam WRKY DNA -binding domain 32 88 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ahy20g1609 228 MobiDBLite consensus disorder prediction 145 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1609 Ahy-Chr20 60304108 60305050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1609 11 228 WRKY Transcription Factor Family AT2G38470 59.916 3.46e-76 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ahy20g1609 WRKY 4.10E-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1609 K13424 - aip:107621821 451.825