Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1503 ATGGTGGACCATTTCATTGTTTGCATTGATCGTATAATACCTTCCACCTCTTGTTTACCATCACCGCCGCACCATGATCATGTTCCAGAACAAGAACAAGCCTGCTCCTCCTCCAATTCTTCCTCTTCAAATTACAAGCGTCACGATGATGATGTGGTTGTGGAGTGTAGAATATGTCAGGAGGAAGATCAAATCCATTTCATGGAGGCCCCTTGTTCCTGTAATGGCACTCTCAAGTTTGCTCATAGAAAGTGCATCCAAAAGTGGTGCAACAAGAAAGGAAATACAATATGTGAAATCTGCAATCAGGTATTTTCACCAAACTATTCTCTTCCAATAGTCAGAAGCAACGACATTATAGCAATTGATCTAAGGCAAGAATGGGAGCGTAATACAGATCTTCGTGTTGCTCTAACATCAGCAGAGAACCAGTTAATGCAAAGAGAATATGAAGAATATGCTATCACACAAACCAGTAGCATCGCTTGCGTCCGCTGTGCCACTCTCATTGTAAGGAAATAG 522 0.4176 MVDHFIVCIDRIIPSTSCLPSPPHHDHVPEQEQACSSSNSSSSNYKRHDDDVVVECRICQEEDQIHFMEAPCSCNGTLKFAHRKCIQKWCNKKGNTICEICNQVFSPNYSLPIVRSNDIIAIDLRQEWERNTDLRVALTSAENQLMQREYEEYAITQTSSIACVRCATLIVRK* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1503 173 MobiDBLite consensus disorder prediction 20 46 - -
Ahy20g1503 173 PANTHER OS01G0894600 PROTEIN 1 171 - -
Ahy20g1503 173 ProSiteProfiles Zinc finger RING-CH-type profile. 48 108 IPR011016 GO:0008270
Ahy20g1503 173 Pfam RING-variant domain 56 101 IPR011016 GO:0008270
Ahy20g1503 173 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 171 IPR033275 -
Ahy20g1503 173 Pfam Protein of unknown function (DUF3675) 107 170 IPR022143 -
Ahy20g1503 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 107 IPR013083 -
Ahy20g1503 173 SMART ringv_2 55 102 IPR011016 GO:0008270
Ahy20g1503 173 SUPERFAMILY RING/U-box 54 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1503 Ahy-Chr20 43112276 43114358 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1503 49 151 C3H Transcription Factor Family AT2G37950 26.364 1.59e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1503 - - ahf:112786832 361.688