Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1461 ATGCAGACGGTCCGAGATCTGTCTATCTGCTTCAGAAGACAAATTGAGAATCATCATCATTTGAGAGTAATGGAAGAAAGCATGTCAGGCTTTTGCATAAGCGACGGAAGAGGAAGTGTTGCTAATAACAATAATAGTGGCGGAAGTGGAACAAAGTGTGGGCGTTGGAACCCAACAACCGAACAAGTGAAGGTTCTGACAGAACTTTTCAGCTCTGGACTCAGAACTCCAAGCACCGATCAGATTCAGAGGATCTCTAATCAGCTCAGTTTCTATGGCAAGATTGAAAGCAAGAATGTCTTCTATTGGTTTCAGAATCATAAGGCTAGGGAGAGACAGAAAAGAAGGCGGCTTTCTTTTGATCATGATCATGGAGGTGGTGGAGTTGGAGATAATCATAGCACCATCAATATTAATCATTCTTCGACACAAACAGGTTTTGCACAGCTGTATTCAGAATCAGAGAAGGTGATTGAGACTCTTCAACTATTCCCATTGAACTCCTTTGGTGAATCAGAATCATCAGAGAAGCTGAGTAGTAGGGTGCATGCAAATGATCAATGCCGGGATAATAATAATTTGATGTTCTCTTACACCATGGGGGAACAAATTGATCACCCTCCATTAGACCTTCGCTTAAGTTTCATGTAA 651 0.4163 MQTVRDLSICFRRQIENHHHLRVMEESMSGFCISDGRGSVANNNNSGGSGTKCGRWNPTTEQVKVLTELFSSGLRTPSTDQIQRISNQLSFYGKIESKNVFYWFQNHKARERQKRRRLSFDHDHGGGGVGDNHSTININHSSTQTGFAQLYSESEKVIETLQLFPLNSFGESESSEKLSSRVHANDQCRDNNNLMFSYTMGEQIDHPPLDLRLSFM* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1461 216 Gene3D - 52 120 - -
Ahy20g1461 216 Pfam Homeodomain 53 113 IPR001356 GO:0003677
Ahy20g1461 216 SUPERFAMILY Homeodomain-like 54 116 IPR009057 -
Ahy20g1461 216 ProSiteProfiles 'Homeobox' domain profile. 49 114 IPR001356 GO:0003677
Ahy20g1461 216 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 24 203 IPR044555 GO:0003700|GO:0099402
Ahy20g1461 216 CDD homeodomain 55 115 IPR001356 GO:0003677
Ahy20g1461 216 SMART HOX_1 51 118 IPR001356 GO:0003677
Ahy20g1461 216 PANTHER WUSCHEL-RELATED HOMEOBOX 7 24 203 - -
Ahy20g1461 216 MobiDBLite consensus disorder prediction 114 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1461 Ahy-Chr20 40003504 40005160 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1461 37 216 Wox Gene Family AT3G11260 55.263 3.03e-61 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Ahy20g1461 Homeodomain 2.90E-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1461 - - adu:107469676 427.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1461 20 40003504 40005160 Ahy20g1461 20 40003504 40005160 ECH
Ahy20g1461 20 40003504 40005160 Ahy10g1073 10 26292804 26294450 hybridization
Ahy20g1461 20 40003504 40005160 Ahy17g0977 17 12199188 12200782 PCT
Ahy20g1461 20 40003504 40005160 Ahy7g0805 7 10197577 10199008 PCT
Ahy17g0977 17 12199188 12200782 Ahy20g1461 20 40003504 40005160 PCT
Ahy7g0805 7 10197577 10199008 Ahy20g1461 20 40003504 40005160 PCT